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Diffstat (limited to 'topics/biohackathon/GNGSoC2023.gmi')
| -rw-r--r-- | topics/biohackathon/GNGSoC2023.gmi | 26 |
1 files changed, 25 insertions, 1 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi index 623a6c6..a5f9019 100644 --- a/topics/biohackathon/GNGSoC2023.gmi +++ b/topics/biohackathon/GNGSoC2023.gmi @@ -59,6 +59,10 @@ git repo genenetwork-machines, guix-bioinformatics * Added Klaus server for git * Fixed channels to work wit Python 3.9 instead of 3.10 +### Week 6 + +* Towards a new workbench with cgit support + ### More => https://ci.genenetwork.org/jobs/guix-bioinformatics @@ -112,7 +116,11 @@ git repo genenetwork3 * Metadata - renamed prefixes * Short names gn: gnt: * Updated virtuoso -* parsing geno files - lmdb support +* parsing geno files - lmdb support + +### Week 6 + +* Improvements on RDF ## LLMs & metadata (RDF) @@ -155,6 +163,10 @@ git repo genenetwork3 * Expose container to Rupert * Add a password +### Week 6 + +* Very close to a working flask app Rupert can try next week + ## API to access data from GN * lead: Rupert @@ -203,6 +215,11 @@ git repo gn-docs & genenetwork3 & SPARQL * Added back-end support for wikidata - finding inconsistencies +### Week 6 + +* API ready for running in a production environment +* Using latest RDF + ## Editing data * lead: Fred @@ -229,6 +246,9 @@ git repo gn-docs & genenetwork3 & SPARQL * Editing has gone on production - fixing issues * Discussion on REST API +### Week 6 + +* Progress on authorization and editing ## Guix parametrization @@ -259,6 +279,10 @@ git repo gn-docs & genenetwork3 & SPARQL * Proposed DSL for parameters +### Week 6 + +* Posted BLOG and started implementation + ## Links * Matrix room is GNSoC2023 |