summaryrefslogtreecommitdiff
path: root/topics/CI-CD
diff options
context:
space:
mode:
Diffstat (limited to 'topics/CI-CD')
-rw-r--r--topics/CI-CD/utility-scripts.gmi63
1 files changed, 0 insertions, 63 deletions
diff --git a/topics/CI-CD/utility-scripts.gmi b/topics/CI-CD/utility-scripts.gmi
deleted file mode 100644
index fb95526..0000000
--- a/topics/CI-CD/utility-scripts.gmi
+++ /dev/null
@@ -1,63 +0,0 @@
-# Utility Scripts
-
-Sometimes we need to run some utility scripts manually to set up certain things that do not render themselves to automation very well.
-
-This is especially relevant for any script that might need to interact with the SQLite database.
-
-This document notes some gotchas that you might run into trying to run
-=> ./topics/authentication/cli_utility_scripts the utility scripts.
-
-## Register System Administrator
-
-Start by getting a shell into the CI/CD container:
-
-```
-sudo guix container exec <PID> /run/current-system/profile/bin/bash --login
-```
-
-replacing =<PID>= with the process ID of the container.
-
-Now stop GN3:
-
-```
-herd stop genenetwork3
-```
-
-In a separate terminal on the *host* system, change the owner of the directory
-and file:
-```
-sudo chown -R fredm /export/data/genenetwork-sqlite
-```
-
-Now start a guix shell in the *genenetwork3* repository (on the host) and run
-the utility script(s) you need to run:
-
-```
-$ cd /home/fredm/genenetwork3
-$ guix shell --container --network --share=/export/data/genenetwork-sqlite \
- --development --file=guix.scm
-[env] $ python3 -m scripts.register_sys_admin \
- /export/data/genenetwork-sqlite/auth.db
-```
-
-Once you have run (all) the utility script(s) you needed to run, you can exit
-the shell and restore the file user:
-```
-sudo chown -R guixbuilder13 /export/data/genenetwork-sqlite
-```
-
-now go back to the CI/CD container shell and restart genenetwork3:
-```
-herd start genenetwork3
-```
-then exit the shell.
-
-### Failed Attempts
-
-Tried
-```
-mount --bind -o rw,umask=0002,gid=1000,uid=1000 \
- /home/frederick/genenetwork/local-ci-cd/data/genenetwork-sqlite \
- /home/frederick/genenetwork/ci-cd-container-dirs
-```
-but the file (and mount target) retain the original permissions.