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Diffstat (limited to 'topics/CI-CD')
| -rw-r--r-- | topics/CI-CD/utility-scripts.gmi | 63 |
1 files changed, 0 insertions, 63 deletions
diff --git a/topics/CI-CD/utility-scripts.gmi b/topics/CI-CD/utility-scripts.gmi deleted file mode 100644 index fb95526..0000000 --- a/topics/CI-CD/utility-scripts.gmi +++ /dev/null @@ -1,63 +0,0 @@ -# Utility Scripts - -Sometimes we need to run some utility scripts manually to set up certain things that do not render themselves to automation very well. - -This is especially relevant for any script that might need to interact with the SQLite database. - -This document notes some gotchas that you might run into trying to run -=> ./topics/authentication/cli_utility_scripts the utility scripts. - -## Register System Administrator - -Start by getting a shell into the CI/CD container: - -``` -sudo guix container exec <PID> /run/current-system/profile/bin/bash --login -``` - -replacing =<PID>= with the process ID of the container. - -Now stop GN3: - -``` -herd stop genenetwork3 -``` - -In a separate terminal on the *host* system, change the owner of the directory -and file: -``` -sudo chown -R fredm /export/data/genenetwork-sqlite -``` - -Now start a guix shell in the *genenetwork3* repository (on the host) and run -the utility script(s) you need to run: - -``` -$ cd /home/fredm/genenetwork3 -$ guix shell --container --network --share=/export/data/genenetwork-sqlite \ - --development --file=guix.scm -[env] $ python3 -m scripts.register_sys_admin \ - /export/data/genenetwork-sqlite/auth.db -``` - -Once you have run (all) the utility script(s) you needed to run, you can exit -the shell and restore the file user: -``` -sudo chown -R guixbuilder13 /export/data/genenetwork-sqlite -``` - -now go back to the CI/CD container shell and restart genenetwork3: -``` -herd start genenetwork3 -``` -then exit the shell. - -### Failed Attempts - -Tried -``` -mount --bind -o rw,umask=0002,gid=1000,uid=1000 \ - /home/frederick/genenetwork/local-ci-cd/data/genenetwork-sqlite \ - /home/frederick/genenetwork/ci-cd-container-dirs -``` -but the file (and mount target) retain the original permissions. |