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diff --git a/tasks/programmer-team/meetings.gmi b/tasks/programmer-team/meetings.gmi new file mode 100644 index 0000000..d972b3b --- /dev/null +++ b/tasks/programmer-team/meetings.gmi @@ -0,0 +1,82 @@ +# Weekly meetings + +In this document we will track tasks based of our weekly meetings. This list sets the agenda +on progress for the next week's meeting. + +## 02-10-2024 +## @felixm +* [ ] Use Aider to contribute and cover to Fred's coding. Share useful prompts. +* [ ] Feed relevant papers to GPT and find similar summary for other datasets. Start with C-Elegans. + + +## @bonfacem +* [ ] Share values with PJ. +* [ ] Assume LMDB files are transient. When hash doesn't exist, generate the hash for that dataset. Use LMDB to store key value pairs of hashes. +* [ ] Add dump script to gn-guile. +* [ ] Add Case Attributes in Virtuoso. + +## @alex +* [ ] Push R/QTL2 to production +* [ ] Have R/QTL2 work for ITP + +Nice to have: +* Think about editing publish data and consequent updates to LMDB. + +## @pjotr +* Kickstart UTHSC VPN access for Felix and Alex. + +## 01-20-2024 +### @bonfacem + +* [ ] Report: OpenAI on Aider - use AI for programming - discuss with @alexm + +=> https://issues.genenetwork.org/topics/ai/aider + +* [-] Metadata: Provide list of case attributes for BXD to @flisso +* [-] Code UI: GeneRIF and GenWiki should work from the mapping page - encourage people to use + - anyone logged in can edit + - If RIF does not exist point to GeneWiki + - If GeneWiki does not exist provide edit page +* [ ] Code export: Exporting traits to lmdb PublishData - @alexm helps with SQL + - missing data should not be an X + - run lmdb design (first code) by @pjotrp + - start exporting traits for Johannes (he will need to write a python reader) +* Later: Improve the work/dev container for @alexm + +### @flisso + +* [ ] Write: Uploader protocol. NOTES: Finished with C-elegans. Yet to test with other datasets. +* [ ] Script: Run Reaper +* [ ] Data: Case attributes - with @bonfacem +* [ ] Write: Create protocol to upload case attributes + +### @alexm + +* [ ] Code: Rqtl2 match Rqtl1: match scan changes. Notes: PR out and added tests. +* [ ] Bug: Fix pair scan. NOTES: Fixed it. But can't test it now since CD is down. +* Later: AI changes + +### @Pjotr + +* [ ] Code: Work on precompute with GEMMA (w. Jameson) +* [ ] Code: Take Bonface's trait files when they become available + + +## 01-27-2024 + +Last week's error with CD and production downtime: +* [ level 1] Container: Error messages when data not loaded in Virtuoso, Indexing. +* [ level 2] Sheepdog: Check services --- sheepdog. Health checkpoints. +* [ level 3] User feedback. Escalate errors correctly to the users, so they can report to coders + +### @bonfacem +* [ ] Troubleshoot CD. +* [ ] Export files in lmdb. Yohannes read file in Python example +* [ ] Metadata: Provide list of case attributes for BXD to @flisso +* [ ] Aider: See if it can generate some guile and python. Give an example. + +### @alexm +* [ ] UI for R/Qtl2. + +### @flisso +* [ ] Look at Fred Python code for the uploader and report on this. |