diff options
Diffstat (limited to 'tasks/pjotrp.gmi')
| -rw-r--r-- | tasks/pjotrp.gmi | 44 |
1 files changed, 25 insertions, 19 deletions
diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi index a7436f7..fb9bf66 100644 --- a/tasks/pjotrp.gmi +++ b/tasks/pjotrp.gmi @@ -1,39 +1,47 @@ # Pjotr tasks -## Tags +# Tags * kanban: pjotrp * assigned: pjotrp * status: in progress -## Notes +# Notes The tasks here should probably be broken out into appropriately tagged issues, where they have not - they can be found and filtered out with tissue (formerly gnbug). => https://issues.genenetwork.org -## Tasks +# Current -### Mempang24 +## Mempang24 -* [ ] Invites -* [ ] Payments -* [ ] Rooms -* [ ] Catering +* [+] Invites +* [+] Payments +* [+] Rooms +* [+] Catering -### Meta-tasks +## Ongoing tasks (current/urgent) + +* [+] Set up stable GeneNetwork server instance with new hardware (see below) +=> /topics/systems/fire-up-genenetwork-system-container.gmi +* [+] Julia as part of GN3 deployment +=> /topics/deploy/julia.gmi +* [+] Shelby's paper+application +* [+] Debian/free software issues incl. vcflib work in Zig and release + +# Tasks + +## Meta-tasks Now (X=done +=WIP _=kickoff ?=?) * [+] Build leadership team -* [X] Build junior team * [+] Build GN consortium * [+] gBAM -* [+] Set up stable GeneNetwork server instance with new hardware (see below) -* [X] Complete Octopus setup with Erik, Andrea and Efraim - adding all machines * [ ] Audit DB security * [ ] p-value global search -* [ ] Xapian search add tags, notmuch style +* [ ] Xapian search add tags, notmuch style (with @zachs) => ../issues/systems/octopus @@ -42,10 +50,9 @@ Now (X=done +=WIP _=kickoff ?=?) => ../issues/gemma/lmm-precomputed-scores * [ ] GEMMA/bulklmm speedups - +* [ ] bulklmm paper * [ ] Add R/qtl2 and multi-parent support with Karl (DO and Magic populations) * [ ] Fix slow search on Mariadb? -* [+] Shelby's application * [.] GeneNetwork paper * + [ ] add FAIR statement * [ ] RISC-V trials @@ -53,7 +60,6 @@ Now (X=done +=WIP _=kickoff ?=?) Longer term -* [X] Aging grant application w. Rob (fall) * [ ] Drive for stability of GN tools (particularly GEMMA OOMP) * [+] AraQTL and WormQTL2 embedding * [+] Work on REST API @@ -68,8 +74,6 @@ Later * [ ] UCSC browser and big wig files * [ ] Jbrowse2 browser -### Ongoing tasks - ### Set up stable server instance with new hardware * [ ] R/qtl2 with Karl @@ -83,7 +87,6 @@ Later * [+] move backup dirs on tux01 to a larger partition (from export3 to export2) * [.] Check Tony's list and improve search for SNPs and Hs * [ ] GeneNetwork consortium (paper & CTC) -* [+] Complete vcflib work in Zig and release * [ ] Fix issues: => https://genenetwork.org/show_trait?trait_id=10441&dataset=HSNIH-PalmerPublish slow mapping => http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=2 @@ -93,6 +96,9 @@ Later ### Done +* [X] Build junior team +* [X] Complete Octopus setup with Erik, Andrea and Efraim - adding all machines +* [X] Aging grant application w. Rob (fall) * [X] Update facilities with new machines * [X] Machine room security and access for bonz, fred, shelby, others... * [X] Support pluto notebooks with Efraim |