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-rw-r--r--tasks/pjotrp.gmi44
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diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi
index a7436f7..fb9bf66 100644
--- a/tasks/pjotrp.gmi
+++ b/tasks/pjotrp.gmi
@@ -1,39 +1,47 @@
# Pjotr tasks
-## Tags
+# Tags
* kanban: pjotrp
* assigned: pjotrp
* status: in progress
-## Notes
+# Notes
The tasks here should probably be broken out into appropriately tagged issues, where they have not - they can be found and filtered out with tissue (formerly gnbug).
=> https://issues.genenetwork.org
-## Tasks
+# Current
-### Mempang24
+## Mempang24
-* [ ] Invites
-* [ ] Payments
-* [ ] Rooms
-* [ ] Catering
+* [+] Invites
+* [+] Payments
+* [+] Rooms
+* [+] Catering
-### Meta-tasks
+## Ongoing tasks (current/urgent)
+
+* [+] Set up stable GeneNetwork server instance with new hardware (see below)
+=> /topics/systems/fire-up-genenetwork-system-container.gmi
+* [+] Julia as part of GN3 deployment
+=> /topics/deploy/julia.gmi
+* [+] Shelby's paper+application
+* [+] Debian/free software issues incl. vcflib work in Zig and release
+
+# Tasks
+
+## Meta-tasks
Now (X=done +=WIP _=kickoff ?=?)
* [+] Build leadership team
-* [X] Build junior team
* [+] Build GN consortium
* [+] gBAM
-* [+] Set up stable GeneNetwork server instance with new hardware (see below)
-* [X] Complete Octopus setup with Erik, Andrea and Efraim - adding all machines
* [ ] Audit DB security
* [ ] p-value global search
-* [ ] Xapian search add tags, notmuch style
+* [ ] Xapian search add tags, notmuch style (with @zachs)
=> ../issues/systems/octopus
@@ -42,10 +50,9 @@ Now (X=done +=WIP _=kickoff ?=?)
=> ../issues/gemma/lmm-precomputed-scores
* [ ] GEMMA/bulklmm speedups
-
+* [ ] bulklmm paper
* [ ] Add R/qtl2 and multi-parent support with Karl (DO and Magic populations)
* [ ] Fix slow search on Mariadb?
-* [+] Shelby's application
* [.] GeneNetwork paper
* + [ ] add FAIR statement
* [ ] RISC-V trials
@@ -53,7 +60,6 @@ Now (X=done +=WIP _=kickoff ?=?)
Longer term
-* [X] Aging grant application w. Rob (fall)
* [ ] Drive for stability of GN tools (particularly GEMMA OOMP)
* [+] AraQTL and WormQTL2 embedding
* [+] Work on REST API
@@ -68,8 +74,6 @@ Later
* [ ] UCSC browser and big wig files
* [ ] Jbrowse2 browser
-### Ongoing tasks
-
### Set up stable server instance with new hardware
* [ ] R/qtl2 with Karl
@@ -83,7 +87,6 @@ Later
* [+] move backup dirs on tux01 to a larger partition (from export3 to export2)
* [.] Check Tony's list and improve search for SNPs and Hs
* [ ] GeneNetwork consortium (paper & CTC)
-* [+] Complete vcflib work in Zig and release
* [ ] Fix issues:
=> https://genenetwork.org/show_trait?trait_id=10441&dataset=HSNIH-PalmerPublish slow mapping
=> http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=2
@@ -93,6 +96,9 @@ Later
### Done
+* [X] Build junior team
+* [X] Complete Octopus setup with Erik, Andrea and Efraim - adding all machines
+* [X] Aging grant application w. Rob (fall)
* [X] Update facilities with new machines
* [X] Machine room security and access for bonz, fred, shelby, others...
* [X] Support pluto notebooks with Efraim