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Diffstat (limited to 'tasks/bonfacem.gmi')
| -rw-r--r-- | tasks/bonfacem.gmi | 37 |
1 files changed, 28 insertions, 9 deletions
diff --git a/tasks/bonfacem.gmi b/tasks/bonfacem.gmi index bd930a0..5445eeb 100644 --- a/tasks/bonfacem.gmi +++ b/tasks/bonfacem.gmi @@ -8,16 +8,32 @@ ## Tasks -* [X] Indexing generif data / Improve Local Search -* [ ] lmdb publishdata output and share with Pjotr and Johannes -* [ ] Add lmdb output hashes to RDF metadata -* [ ] https://github.com/genenetwork/genenetwork2/blob/testing/scripts/sample_count.py -* [ ] Describe Generif access for Rob -* [ ] Add case attributes to RDF and share with Felix +### This week + +* [ ] Describe Generif access for Rob in an email +* [ ] Migrate fahamuai RAG to VPS and switch tokens to GGI OpenAI account +* 1. running AI server using (our) VPS and our tokens +* 2. read the code base +* 3. assess porting it to Guix (don't do any work) +* [ ] Add lmdb output hashes with index and export LMDB_DATA_DIRECTORY +* [ ] Share small database with @pjotrp and @felixl + +### Later + +* [ ] Sample/individual/strain/genometype counts for PublishData only - ProbeSetData? https://github.com/genenetwork/genenetwork2/blob/testing/scripts/sample_count.py - mirror in RDF and use global search +* - search for all traits that have more than X samples * [ ] xapian search, add dataset size keys, as well as GN accession id, trait id, and date -* [ ] Improve xapian markdown docs to show all used fields/keys with examples -* [+] Use aider -* [ ] Rest API for precompute output +* - Improve xapian markdown docs to show all used fields/keys with examples +* [+] Use aider - give a presentation in the coming weeks +* [ ] Add case attributes to RDF and share with Felix (depends on @felixl) + +### Even later + +* [ ] Rest API for precompute output (mapping with GEMMA) +* [ ] GNQA add GN metadata (to RAG) +* - Focus on RIF +* - triple -> plain text +* - bob :fatherof nancy -> Bob is the father of Nancy. ## Later @@ -45,3 +61,6 @@ Should something in one of these closed issues be amiss, we can always and shoul Currently closed issues are: => https://issues.genenetwork.org/search?type=closed-issue&query=assigned%3ABonfaceKilz%20AND%20type%3Aissue%20AND%20is%3Aclosed Closed Issues + +* [X] Indexing generif data / Improve Local Search +* [X] lmdb publishdata output and share with Pjotr and Johannes |