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Diffstat (limited to 'tasks/bonfacem.gmi')
| -rw-r--r-- | tasks/bonfacem.gmi | 49 |
1 files changed, 46 insertions, 3 deletions
diff --git a/tasks/bonfacem.gmi b/tasks/bonfacem.gmi index 52f4027..7514e5b 100644 --- a/tasks/bonfacem.gmi +++ b/tasks/bonfacem.gmi @@ -8,9 +8,44 @@ ## Tasks -* [X] Indexing generif data / Improve Local Search -* [ ] Add hashes to RDF metadata -* [-] Brain Data (To be spec'ed further) +### This week + +* [ ] Describe Generif/wikidata access for Rob in an email with test account on CD +* 1. Send email to Rob +* 2. Work on production +* [ ] Migrate fahamuai RAG to VPS and switch tokens to GGI OpenAI account +* 1. Running AI server using (our) VPS and our tokens +* 2. Read the code base +* 3. Try ingestion and prompt (REST API) +* 4. Backup state from production Elixir +* 5. Assess porting it to Guix (don't do any work) - minimum version Elixir +* [ ] xapian search, add dataset size keys, as well as GN accession id, trait id, and date/year +* - Improve xapian markdown docs to show all used fields/keys with examples +* - genewiki search (link in table? check with Rob) +* - base line with GN1 search - add tests +* - Fix missing search term for sh* - both menu search and global search +* - Use GN1 as a benchmark for search results (mechanical Rob?) +* - Xapian ranges for markers +* [ ] With Alex get rqtl2 demo going in CD (for BXD) + +### Later + +* [ ] Sample/individual/strain/genometype counts for PublishData only - ProbeSetData? https://github.com/genenetwork/genenetwork2/blob/testing/scripts/sample_count.py - mirror in RDF and use global search +* - search for all traits that have more than X samples +* [+] Use aider - give a presentation in the coming weeks +* [ ] Add case attributes to RDF and share with Felix (depends on @felixl) + +### Even later + +* [ ] Rest API for precompute output (mapping with GEMMA) +* [ ] GNQA add GN metadata (to RAG) +* - Focus on RIF +* - triple -> plain text +* - bob :fatherof nancy -> Bob is the father of Nancy. + +## Later + +* [ ] AI improvements ### On going tasks @@ -34,3 +69,11 @@ Should something in one of these closed issues be amiss, we can always and shoul Currently closed issues are: => https://issues.genenetwork.org/search?type=closed-issue&query=assigned%3ABonfaceKilz%20AND%20type%3Aissue%20AND%20is%3Aclosed Closed Issues + +* [X] Indexing generif data / Improve Local Search +* [X] lmdb publishdata output and share with Pjotr and Johannes + +## Done + +* [X] Add lmdb output hashes with index and export LMDB_DATA_DIRECTORY +* [X] Share small database with @pjotrp and @felixl |