diff options
Diffstat (limited to 'tasks/alexm.gmi')
| -rw-r--r-- | tasks/alexm.gmi | 20 |
1 files changed, 11 insertions, 9 deletions
diff --git a/tasks/alexm.gmi b/tasks/alexm.gmi index c39cf70..2c1b129 100644 --- a/tasks/alexm.gmi +++ b/tasks/alexm.gmi @@ -19,19 +19,17 @@ You can refine the search by constraining the checks some more, e.g. to get high ## This week * [ ] Start application - Pwani -* [ ] Correlations - Fred is having issues - Rust updated on Guix -* - also take a look at long running SQL statement and large LIMIT value +* - [X] Got all transcripts +* [+] Correlations - Fred is having issues - Rust updated on Guix +* - also take a look at long running SQL statement and large LIMIT value (check prod!) * [ ] Friend of UTHSC - Pjotr needs to send forms -* [ ] Disable spinner on production -* [ ] When bonz is ready wire up GNQA -* + balg-qa.genenetwork.org -* [ ] Don't support new PIL - stick to the old one in guix-bioninformatics +* [+] Disable spinner on production (check prod!) * [+] Rqtl2 - BXD output work on CD * - [ ] should go to production w. fredm -* - [ ] DO mice family file - children are heterozygous - family file contains parents->child -* [X] Rqtl1 - ITP output - 3K individuals - family file +* - [X] DO mice family file - children are heterozygous - family file contains parents->child +* - [ ] DO GN2 compatible by generating .geno files * [ ] Minor refactorings - Rqtl2 is hacky -* [ ] Work in system container and document +* [ ] Work in development system container and document => https://git.genenetwork.org/gn-machines/commit/?h=gn-local-development-container&id=589dcf32be90f5ec827cb6976d3cb5838d500ac0 * [+] Create terminal output for external processes on *PRODUCTION* (Rqtl1, Rqtl2, GEMMA, pair-scan are done --- WGCNA as a pilot, with @bonfacem and @pjotrp) @@ -44,6 +42,10 @@ You can refine the search by constraining the checks some more, e.g. to get high ## Done +* [X] Rqtl1 - ITP output - 3K individuals - family file +* [X] When bonz is ready wire up GNQA +* + balg-qa.genenetwork.org +* [X] Don't support new PIL - stick to the old one in guix-bioninformatics * [X] Make GNQA reliable (with @fahamu) * [X] Improve UX for GNQA (with @shelbys) -- Adrian wants to use our AI UX for their setup * [X] GNQA add abstracts pubmed (with @shelbys) |