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@@ -75,6 +75,95 @@ You can refine the search by constraining the checks some more, e.g. to get high
 
 * masters ; submit documents 
 
+## 9/06/2025
+
+* [x] no login for gnqna
+* [-] hsrat rqtl2 integration: follow up on the dumping genotypes files to lmdb 
+
+
+## 16/06/2025
+
+* [x] implementation for  no login  for gnqa users.
+ see issue here: https://issues.genenetwork.org/issues/gnqa/implement-no-login-requirement-for-gnqa
+* [-] hsrat rqtl2 integration: follow up on the dumping genotypes files to lmdb with bons 
+* [] create rqtl2 adapter for reading cross from  lmdb 
+
+
+## 23/06/2025
+
+*  [-]  focus on documentation/source code  for read cross  ;;add option for reading lmdb
+*  [-]  looking at thor an lmdb interface
+*  [x] implementation of no login for gnqna users ;; TODO push this code to cd.
+* [x]  for nologin llm provide the correct feedbacks to user  if ai search does not meet criteria;; currently only static response `Please login to view AI generated summary`
+
+
+## 30/06/2025
+
+* [] rqtl2 lmdb interfac
+e
+
+## 7/7/2025
+
+* [x] guix packaging for thor package
+* [x] reading metadata from lmdb file using thor 
+* [-] working on reconstructing the genotype files to geno, geno_map and pheno_map file
+* [x] rate limiting for gnqna users.
+* [x]  check on tokens for no logged in users
+* [x]  Look at isse about signing tokens for non logged in users 
+
+
+## 21/7/2025
+* [x] working on reconstructing/reading  the genotype files based on bons dumping script 
+* [x]  generate and validate cross objects
+
+## 29/7/2025
+* [x] adding founder_geno and pheno covariates pheno
+* [-] minor fixes for lmdb matrix script (missing metadata)
+* [-] check phenotype work  for lmdb
+
+## 4/8/2025
+* [-] refactoring lmdb matrix script
+* [-] integrating fetching rqtl2 from lmdb using bxd as a test pilot
+
+
+##  11/8/2025
+
+* [x] integrating lmdb genotypes  for rqtl2 computation for BXD
+
+
+##  18/8/2025
+
+* [x] integrating lmdb genotypes for rqtl2 computation for BXD
+
+## 25/8/2025
+* [x] script to dump phenotypes and cross metadata to lmdb
+
+## 31/8/2025
+
+* [x] generic script that can  parse json cross files and dump the metadata to lmdb
+* [x] follow up on dumped phenotypes in LMDB for GeneNetwork cc @bons
+* [x] integrating lmdb rqtl2 adapter to CD (test this on cd for bxd.)
+
+## 23/9/2025
+* [x] dumping  phenotypes to lmdb (BXDPublish)
+* [x] dumping cross metadata to lmdb
+
+## 30/9/2025
+* [x]  profiling and benchmarking  read_lmdb_cross against read_cross
+* [-] Run this on tux02 and integrate to CD
+
+
+## 7/9/2025
+
+* [-] integrate rqtl2-lmdb adapter to CD cc @bons with directory setup.
+* [x] improvement on rqtl2-lmdb adapter script;  add covariates supports.
+
+
+## 15/9/2025
+
+* [-] clone qtl2 repo and  build rqtl2-lmdb package locally.
+* [] package rqtl2-lmdb package to guix-bioinformatics.
+
 ## Next week(s)
 
 * [ ] Accelerate Xapian functionality - needs Aider key from Pjotr