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Diffstat (limited to 'issues')
| -rw-r--r-- | issues/error-zooming-chromosome.gmi | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/issues/error-zooming-chromosome.gmi b/issues/error-zooming-chromosome.gmi new file mode 100644 index 0000000..55a902c --- /dev/null +++ b/issues/error-zooming-chromosome.gmi @@ -0,0 +1,35 @@ +# Error when attempt to zoom to a chromosome after mapping a PCA trait + +## Tags + +* assigned: zsloan +* type: bug +* priority: high +* status: unclear +* keywords: PCA, from github, high priority + +## Description + +=> https://github.com/genenetwork/genenetwork2/issues/367 From GitHub + +When I produced a PCA trait in GN2, I could map fine, but when I selected a particular chromosome I got the following error: + +``` +GeneNetwork tux01:gene:2.11-rc2-production-5c6be7a36 http://gn2.genenetwork.org/run_mapping ( 5:57PM UTC Aug 22, 2019) + Traceback (most recent call last): + File "/usr/local/guix-profiles/gn-latest-20181119/lib/python2.7/site-packages/flask/app.py", line 1639, in full_dispatch_request + rv = self.dispatch_request() + File "/usr/local/guix-profiles/gn-latest-20181119/lib/python2.7/site-packages/flask/app.py", line 1625, in dispatch_request + return self.view_functions[rule.endpoint](**req.view_args) + File "/export/local/home/gn2/production/gene/wqflask/wqflask/views.py", line 669, in mapping_results_page + template_vars = run_mapping.RunMapping(start_vars, temp_uuid) + File "/export/local/home/gn2/production/gene/wqflask/wqflask/marker_regression/run_mapping.py", line 53, in __init__ + helper_functions.get_species_dataset_trait(self, start_vars) + File "/export/local/home/gn2/production/gene/wqflask/utility/helper_functions.py", line 23, in get_species_dataset_trait + self.dataset = data_set.create_dataset(start_vars['dataset']) + File "/export/local/home/gn2/production/gene/wqflask/base/data_set.py", line 68, in create_dataset + dataset_type = Dataset_Getter(dataset_name) + File "/export/local/home/gn2/production/gene/wqflask/base/data_set.py", line 120, in __call__ + return self.datasets[name] + KeyError: u'Temp' +``` |