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Diffstat (limited to 'issues')
| -rw-r--r-- | issues/mgamma/mgamma-convert.gmi | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/issues/mgamma/mgamma-convert.gmi b/issues/mgamma/mgamma-convert.gmi index d0ece51..bb19033 100644 --- a/issues/mgamma/mgamma-convert.gmi +++ b/issues/mgamma/mgamma-convert.gmi @@ -13,6 +13,18 @@ MGamma can convert between different formats. * [ ] Store genotypes as floats instead of doubles in lmdb * [ ] Add annotations to genotype lmdb format - probably as the first named columns * [ ] Provide a metadata header in JSON that tracks such info and a version + +``` +{type: "geno", version:0.01, float: true, anno:["name","chr","pos"]} +``` * [ ] Convert genotypes from strings using Rqtl2 CSV and metadata-JSON version of the control format, see => https://kbroman.org/qtl2/assets/vignettes/input_files.html + +* [ ] Write kinship lmdb as floats (half size) +* [ ] If symmetric only store half the data +* [ ] Add JSON meta header to track that information + +``` +{type: "GRM", version:0.01, float: true, symmetric: true} +``` |