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Diffstat (limited to 'issues')
| -rw-r--r-- | issues/unresponsive-rdf-in-cd.gmi | 64 |
1 files changed, 64 insertions, 0 deletions
diff --git a/issues/unresponsive-rdf-in-cd.gmi b/issues/unresponsive-rdf-in-cd.gmi new file mode 100644 index 0000000..dffa2fb --- /dev/null +++ b/issues/unresponsive-rdf-in-cd.gmi @@ -0,0 +1,64 @@ +# Unresponsive Virtuoso in CD + +* assigned: bonfacem +* tags: critical + +## Description + +In CD, when you navigate to a datasets page, say: + +=> https://cd.genenetwork.org/datasets/BXDPublish /datasets/BXDPublish + +you get the following stack trace: + +``` + GeneNetwork 2.11-rc2 https://cd.genenetwork.org/datasets/BXDPublish (11:31AM UTC Apr 02, 2024) +Traceback (most recent call last): + File "/gnu/store/jl6x90wdbwbs7c7zxnyz2kfd0qx8bf5h-profile/lib/python3.10/site-packages/flask/app.py", line 1523, in full_dispatch_request + rv = self.dispatch_request() + File "/gnu/store/jl6x90wdbwbs7c7zxnyz2kfd0qx8bf5h-profile/lib/python3.10/site-packages/flask/app.py", line 1509, in dispatch_request + return self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args) + File "/genenetwork2/gn2/wqflask/views.py", line 1176, in get_dataset + return render_template( + File "/gnu/store/jl6x90wdbwbs7c7zxnyz2kfd0qx8bf5h-profile/lib/python3.10/site-packages/flask/templating.py", line 148, in render_template + return _render( + File "/gnu/store/jl6x90wdbwbs7c7zxnyz2kfd0qx8bf5h-profile/lib/python3.10/site-packages/flask/templating.py", line 128, in _render + rv = template.render(context) + File "/gnu/store/jl6x90wdbwbs7c7zxnyz2kfd0qx8bf5h-profile/lib/python3.10/site-packages/jinja2/environment.py", line 1291, in render + self.environment.handle_exception() + File "/gnu/store/jl6x90wdbwbs7c7zxnyz2kfd0qx8bf5h-profile/lib/python3.10/site-packages/jinja2/environment.py", line 926, in handle_exception + raise rewrite_traceback_stack(source=source) + File "/genenetwork2/gn2/wqflask/templates/dataset.html", line 1, in top-level template code + {% extends "base.html" %} + File "/genenetwork2/gn2/wqflask/templates/base.html", line 200, in top-level template code + {% block content %} + File "/genenetwork2/gn2/wqflask/templates/dataset.html", line 91, in block 'content' + <a hx-get={{ url_for('metadata.view_history', id_=dataset.id.split('/')[-1], name=name, title=(dataset.title or dataset.label or dataset.altLabel)) }} hx-target=".dataset-content" hx-push-url="true" hx-select="#history">History</a> + File "/gnu/store/jl6x90wdbwbs7c7zxnyz2kfd0qx8bf5h-profile/lib/python3.10/site-packages/jinja2/environment.py", line 475, in getattr + return getattr(obj, attribute) +jinja2.exceptions.UndefinedError: 'dict object' has no attribute 'id' +``` + +Doing a CURL on the CD RDF endpoint yields: + + +``` +╭─munyoki@saitama ~ ╰─➤ curl https://cd.genenetwork.org/api3/metadata/datasets/BXDPublish +{} +``` + +## Resolution + +At one point, CD was restarted and the password was not set. To remedy this: + +``` +SQL> set password "dba" "XXXXXXXXXX"; +SQL> UPDATE ws.ws.sys_dav_user SET u_account_disabled=1 WHERE u_name='dav'; +SQL> CHECKPOINT; +``` + +Refer to the following for more details: + +=> /topics/systems/virtuoso Configuring Virtuoso + +* closed |