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Diffstat (limited to 'issues')
| -rw-r--r-- | issues/autogenerate-documuntation-for-rdf.gmi | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/issues/autogenerate-documuntation-for-rdf.gmi b/issues/autogenerate-documuntation-for-rdf.gmi index 99bba55..6d7ba68 100644 --- a/issues/autogenerate-documuntation-for-rdf.gmi +++ b/issues/autogenerate-documuntation-for-rdf.gmi @@ -11,3 +11,52 @@ See this => https://github.com/genenetwork/dump-genenetwork-database/pull/11 + +Given an s-expression say: + +``` +(define-dump dump-species + (tables (Species)) + (schema-triples + (gn:name rdfs:range rdfs:Literal) + (gn:displayName rdfs:range rdfs:Literal) + (gn:binomialName rdfs:range rdfs:Literal) + (gn:family rdfs:range rdfs:Literal)) + (triples (string->identifier "species" (field Species FullName)) + (set rdf:type 'gn:species) + (set gn:name (field Species SpeciesName)) + (set gn:displayName (field Species MenuName)) + (set gn:binomialName (field Species FullName)) + (set gn:family (field Species Family)) + (set gn:organism (ontology 'ncbiTaxon: (field Species TaxonomyId))))) +``` + +... parse the s-expression into markdown into a form that looks like this: + +``` + +# dump-species +## Metadata for predicates used in defining dump-species + +gn:name -> rdfs:range -> rdfs:Literal +gn:display -> rdfs:range -> rdfs:Literal +gn:binomialName -> rdf:range -> rdfs:Literal +gn:family -> rdfs:range -> rdfs:Literal + +## Triples inside the dump-species +An example of an identifer that would be used as a subject is: gn:species_mus_musculus + + +gn:species_mus_musculus -> rdf:type -> gn:species +gn:species_mus_musculus -> gn:name -> Species.SpeciesName +gn:species_mus_musculus -> gn:displayName -> Species.MenuName +gn:species_mus_musculus -> gn:binomialName -> Species.FullName +gn:species_mus_musculus -> gn:family -> Species.Family +gn:species_mus_musculus -> gn:organism -> Species.TaxonomyId + +Example query to fetch all metadata about a species: + +: SELECT ?p ?o WHERE { gn:species_mus_musculus ?p ?o } LIMIT 1 +``` + +Some current challenges I'm facing: in the case of "blank-nodes", how do I autogenerate the docs? |