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Diffstat (limited to 'issues')
| -rw-r--r-- | issues/fetch-trait-names-for-phenotypes.gmi | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/issues/fetch-trait-names-for-phenotypes.gmi b/issues/fetch-trait-names-for-phenotypes.gmi new file mode 100644 index 0000000..7647db1 --- /dev/null +++ b/issues/fetch-trait-names-for-phenotypes.gmi @@ -0,0 +1,43 @@ +# Fetch trait names for phenotypes + +## Tags + +* assigned: +* status: pending +* priority: unclear +* type: feature-request, enhancement +* keywords: phenotype, from github + +## Members + +* robw +* rupertoverall + +## Description + +=> https://github.com/genenetwork/genenetwork2/issues/564 From GitHub + +The 'Fetch Trait Info' query returns detailed information for transcript expression traits, but not for traits from the 'Publish' database. + +### Describe the solution you'd like + +For example, downloading the data as CSV via the web interface includes the following header information: + +``` + +Record ID,10620 +Symbol,WMZTrgtQuadTime +Description,"Central nervous system, behavior, learning and memory: Morris water maze search-time preference, amount of time spent in the trained quadrant of the pool minus mean time in the alternative quadrants [seconds]" + +``` + +Whereas via the API, only information on pre-computed QTL mapping is returned: + +``` + + additive id locus lrs +10620 4.7790005 1382 rs32197605 9.39579775800466 + +``` + +It would be great to be able to access trait names and descriptions programatically as is already possible for transcript expression traits. |