diff options
Diffstat (limited to 'issues')
| -rw-r--r-- | issues/edit-metadata-bugs.gmi | 85 | ||||
| -rw-r--r-- | issues/metadata-edits-improvements.gmi | 9 |
2 files changed, 55 insertions, 39 deletions
diff --git a/issues/edit-metadata-bugs.gmi b/issues/edit-metadata-bugs.gmi index 95ababf..25ffb9e 100644 --- a/issues/edit-metadata-bugs.gmi +++ b/issues/edit-metadata-bugs.gmi @@ -3,60 +3,77 @@ # Tags * assigned: bonfacem -* keywords: metatadata -* status: in progress +* keywords: metadata +* status: stalled * priority: high -#TODO +## Tasks -- [ ] I cannot edit the PMID number +* [ ] I cannot edit the PMID number -- [ ] There is inadequate feedback on whether or not changes have been accepted (PMID: 24640950. Publication below) +* [ ] There is inadequate feedback on whether or not changes have been accepted (PMID: 24640950. Publication below) => https://pubmed.ncbi.nlm.nih.gov/24640950/ -- [X] I am unable to add the Abstract for the paper +* [X] I am unable to add the Abstract for the paper -- [X] There is no place to enter the volume number of the journal. Please see GN1. +* [X] There is no place to enter the volume number of the journal. Please see GN1. -- [X] I cannot change the "authors" text. +* [X] I cannot change the "authors" text. -# Notes -### Wed 04 May 2022 23:02:12 EAT (Munyoki) +* [X] Fix Typos -- Links should be in blue and highlighted ("History"). +* [X] Remove some form fields (Sequence) -- Make important things stand out in a user-friendly way. Right now, the most important thing: editing metadata by downloading a file is at the very bottom. +* [X] Adjust the size of some form fields -- Editing the pubmed id should have a cascading fx on the related traits .i.e. editing the pudmed id of one trait should update the pubmed id for all the related traits. +* [X] Remove the "Reset" button -- Hide the "reset" button. +* [X] Move the update history to it's own page -- "Sequence" should not be part of the form. +* [X] Re-order form fields to match common citation styles -- Historical reasons for the "pre-*" field e.g. pre-publication was explained in detail. They are there to mark a sort of "confidential" not-yet-ready data. +* [-] Re-design the button for uploading the forms -- The word "sample data file" is confusing to users. +## Description -- When adding case-attributes, new columns should be added on the fly. +This is closely related to: -- Useful idea: For small datasets, allow edits on UI. For large datasets, or data that has new case-attributes, provide excel files. +=> /issues/metadata-edits-improvements -- There are some fields which are important, but not really used much: "lab code", "Authorised Users". +Here's a list of UI elements and how the should be: -- UI tweaks: left justify buttons. +* Links should be in blue and highlighted ("History"). -- No need to edit the case attribute names that are similar in the db. I'll need to find a way to infer this using existing information. This means to remove this hack: Sex(3), Sex(14). Notice the id's embedded in the names. +* Make important things stand out in a user-friendly way. Right now, the most important thing: editing metadata by downloading a file is at the very bottom. -- Set up a meet with Suheeta. See how she uploads the data. +* Editing the pubmed id should have a cascading fx on the related traits .i.e. editing the pudmed id of one trait should update the pubmed id for all the related traits. -- Typos: "Pre" is not a word on it's own. "Pre Publication" should be "Pre-publication". Key idea here is to correct typos when spotted, and not to leave this to the hands of the end-user. +* Hide the "reset" button. -- Hints on certain forms. When the authors form is empty, the user is showed a grayed templet of the input format for the authors. For other form element, if feasible, collaborate with Rob to see what useful hints we can provide the end-user. +* "Sequence" should not be part of the form. -### Thu 05 May 2022 10:56:53 EAT (Munyoki) +* Historical reasons for the "pre-*" field e.g. pre-publication was explained in detail. They are there to mark a sort of "confidential" not-yet-ready data. -A note about some confusion about PublicationId and PubMed_ID pointed out by Zach: +* The word "sample data file" is confusing to users. + +* When adding case-attributes, new columns should be added on the fly. + +* Useful idea: For small datasets, allow edits on UI. For large datasets, or data that has new case-attributes, provide excel files. + +* There are some fields which are important, but not really used much: "lab code", "Authorised Users". + +* UI tweaks: left justify buttons. + +* No need to edit the case attribute names that are similar in the db. I'll need to find a way to infer this using existing information. This means to remove this hack: Sex(3), Sex(14). Notice the id's embedded in the names. + +* Set up a meet with Suheeta. See how she uploads the data. + +* Typos: "Pre" is not a word on it's own. "Pre Publication" should be "Pre-publication". Key idea here is to correct typos when spotted, and not to leave this to the hands of the end-user. + +* Hints on certain forms. When the authors form is empty, the user is showed a grayed templet of the input format for the authors. For other form element, if feasible, collaborate with Rob to see what useful hints we can provide the end-user. + +A note about some confusion about PublicationId and PubMed_ID (credits: Zach): ``` There might be some confusion over the "PublicationId" vs "PubMed_ID"; the @@ -108,16 +125,10 @@ PMIDs with those attributes? Like a clickable link that would take you to that p ``` -### Fri 06 May 2022 12:44:54 EAT (Munyoki) -See: -=> https://github.com/genenetwork/genenetwork2/pull/705 +## Resolution + +Most of the UI issues were fixed in: -- [X] Fix Typos -- [X] Remove some form fields (Sequence) -- [X] Adjust the size of some form fields -- [X] Remove the "Reset" button -- [X] Move the update history to it's own page -- [X] Re-order form fields to match common citation styles -- [-] Re-design the button for uploading the forms +=> https://github.com/genenetwork/genenetwork2/pull/705 UI/Improvements to data uploader diff --git a/issues/metadata-edits-improvements.gmi b/issues/metadata-edits-improvements.gmi index 3d9b275..d44bfa6 100644 --- a/issues/metadata-edits-improvements.gmi +++ b/issues/metadata-edits-improvements.gmi @@ -9,6 +9,11 @@ * keywords: metadata, phenotypes ## Tasks + +This is closely related to: + +=> /issues/edit-metadata-bugs + ### mRNA assay/Published Phenotypes * [X] All headers should be left justified. Please avoid centering headers of any type. Why: Because all windows are made smaller from the right to the left. Centered headers therefore "squirrel" about depending on window width. We are not designing wedding invitations. @@ -42,9 +47,9 @@ Fixes [so far]: -=> https://github.com/genenetwork/genenetwork2/pull/696 +=> https://github.com/genenetwork/genenetwork2/pull/696 Metadata Upload UI Improvements -=> https://github.com/genenetwork/genenetwork2/commit/36d2cbc96bd5219e044ce1728f750ceefd0fa5f6 +=> https://github.com/genenetwork/genenetwork2/commit/36d2cbc96bd5219e044ce1728f750ceefd0fa5f6 Style improvements for editing phenotypes Use-case (mRNA assay): |