diff options
Diffstat (limited to 'issues/systems/apps.gmi')
| -rw-r--r-- | issues/systems/apps.gmi | 22 |
1 files changed, 17 insertions, 5 deletions
diff --git a/issues/systems/apps.gmi b/issues/systems/apps.gmi index 51c9d24..b9d4155 100644 --- a/issues/systems/apps.gmi +++ b/issues/systems/apps.gmi @@ -153,7 +153,7 @@ downloading from http://cran.r-project.org/src/contrib/Archive/KernSmooth/KernSm - 'configure' phasesha256 hash mismatch for /gnu/store/n05zjfhxl0iqx1jbw8i6vv1174zkj7ja-KernSmooth_2.23-17.tar.gz: expected hash: 11g6b0q67vasxag6v9m4px33qqxpmnx47c73yv1dninv2pz76g9b actual hash: 1ciaycyp79l5aj78gpmwsyx164zi5jc60mh84vxxzq4j7vlcdb5p -hash mismatch for store item '/gnu/store/n05zjfhxl0iqx1jbw8i6vv1174zkj7ja-KernSmooth_2.23-17.tar.gz' + hash mismatch for store item '/gnu/store/n05zjfhxl0iqx1jbw8i6vv1174zkj7ja-KernSmooth_2.23-17.tar.gz' ``` Guix checks and it is not great CRAN allows for changing tarballs with the same version number!! Luckily building with a more recent version of Guix just worked (TM). Now we create a root too: @@ -184,12 +184,24 @@ and it looks like lines like these need to be updated: => https://github.com/genenetwork/singleCellRshiny/blob/6b2a344dd0d02f65228ad8c350bac0ced5850d05/app.R#L167 -Let me ask the author Siamak Yousefi. +Let me ask the author Siamak Yousefi. I think we'll drop it. + +## longevity + +Package definition is at + +=> https://git.genenetwork.org/guix-bioinformatics/tree/gn/packages/mouse-longevity.scm + +Container is at + +=> https://git.genenetwork.org/guix-bioinformatics/tree/gn/services/bxd-power-container.scm ## jumpshiny +Jumpshiny is hosted on balg01. Scripts are in tux02 git. + ``` -balg01:~/gn-machines$ guix system container --network -L . -L ../guix-bioinformatics/ -L ../guix-past/modules/ --substitute-urls='https: -//ci.guix.gnu.org https://bordeaux.guix.gnu.org https://cuirass.genenetwork.org' test-r-container.scm -L ../guix-forge/guix/ -/gnu/store/xyks73sf6pk78rvrwf45ik181v0zw8rx-run-container +root@balg01:/home/j*/gn-machines# . /usr/local/guix-profiles/guix-pull/etc/profile +guix system container --network -L . -L ../guix-forge/guix/ -L ../guix-bioinformatics/ -L ../guix-past/modules/ --substitute-urls='https://ci.guix.gnu.org https://bordeaux.guix.gnu.org https://cuirass.genenetwork.org' test-r-container.scm -L ../guix-forge/guix/gnu/store/xyks73sf6pk78rvrwf45ik181v0zw8rx-run-container +/gnu/store/6y65x5jk3lxy4yckssnl32yayjx9nwl5-run-container ``` |