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+# Generate Heatmaps Failing
+
+## Tags
+
+* type: bug
+* status: open
+* priority: medium
+* assigned: fredm, zachs, zsloan
+* keywords: genenetwork3, gn3, GN3, heatmaps
+
+## Reproduce
+
+* Go to https://genenetwork.org/
+* Under "Select and Search" menu, enter "synap*" for the "Get Any" field
+* Click "Search"
+* In search results page, select first 10 traits
+* Click "Add"
+* Under "Create a new collection" enter the name "newcoll" and click "Create collection"
+* In the collections page that shows up, click "Select All" once
+* Ensure all the traits are selected
+* Click "Generate Heatmap" and wait
+* Note how system fails silently with no heatmap presented
+
+### Notes
+
+On https://gn2-fred.genenetwork.org the heatmaps fails with a note ("ERROR: undefined"). In the logs, I see "Module 'scipy' has no attribute 'array'" which seems to be due to a change in numpy.
+=> https://github.com/MaartenGr/BERTopic/issues/1791
+=> https://github.com/scipy/scipy/issues/19972
+
+This issue should not be present with python-plotly@5.20.0 but since guix-bioinformatics pins the guix version to `b0b988c41c9e0e591274495a1b2d6f27fcdae15a`, we are not able to pull in newer versions of packages from guix.