summaryrefslogtreecommitdiff
path: root/issues/genenetwork2
diff options
context:
space:
mode:
Diffstat (limited to 'issues/genenetwork2')
-rw-r--r--issues/genenetwork2/broken-collections-features.gmi44
-rw-r--r--issues/genenetwork2/fix-display-for-time-consumed-for-correlations.gmi15
2 files changed, 59 insertions, 0 deletions
diff --git a/issues/genenetwork2/broken-collections-features.gmi b/issues/genenetwork2/broken-collections-features.gmi
new file mode 100644
index 0000000..4239929
--- /dev/null
+++ b/issues/genenetwork2/broken-collections-features.gmi
@@ -0,0 +1,44 @@
+# Broken Collections Features
+
+## Tags
+
+* type: bug
+* status: open
+* priority: high
+* assigned: zachs, fredm
+* keywords: gn2, genenetwork2, genenetwork 2, collections
+
+## Descriptions
+
+There are some features in the search results page, and/or the collections page that are broken — these are:
+
+* "CTL" feature
+* "MultiMap" feature
+* "Partial Correlations" feature
+* "Generate Heatmap" feature
+
+### Reproduce Issue
+
+* Go to https://genenetwork.org
+* Select "Mouse (Mus musculus, mm10) for "Species"
+* Select "BXD Family" for "Group"
+* Select "Traits and Cofactors" for "Type"
+* Select "BXD Published Phenotypes" for "Dataset"
+* Type "locomotion" in the "Get Any" field (without the quotes)
+* Click "Search"
+* In the results page, select the traits with the following "Record" values: "BXD_10050", "BXD_10051", "BXD_10088", "BXD_10091", "BXD_10092", "BXD_10455", "BXD_10569", "BXD_10570", "BXD_11316", "BXD_11317"
+* Click the "Add" button and add them to a new collection
+* In the resulting collections page, click the button for any of the listed failing features above
+
+### Failure modes
+
+* The "CTL" and "WCGNA" features have a failure mode that might have been caused by recent changes making use of AJAX calls, rather than submitting the form manually.
+* The "MultiMap" and "Generate Heatmap" features raise exceptions that need to be investigated and resolved
+* The "Partial Correlations" feature seems to run forever
+
+## Break-out Issues
+
+We break-out the issues above into separate pages to track the progress of the fixes for each feature separately.
+
+=> /issues/genenetwork3/ctl-maps-error
+=> /issues/genenetwork3/generate-heatmaps-failing
diff --git a/issues/genenetwork2/fix-display-for-time-consumed-for-correlations.gmi b/issues/genenetwork2/fix-display-for-time-consumed-for-correlations.gmi
new file mode 100644
index 0000000..0c8e9c8
--- /dev/null
+++ b/issues/genenetwork2/fix-display-for-time-consumed-for-correlations.gmi
@@ -0,0 +1,15 @@
+# Fix Display for the Time Consumed for Correlations
+
+## Tags
+
+* type: bug
+* status: closed, completed
+* priority: low
+* assigned: @alexm, @bonz
+* keywords: gn2, genenetwork2, genenetwork 2, gn3, genenetwork3 genenetwork 3, correlations, time display
+
+## Description
+
+The breakdown of the time consumed for the correlations computations, displayed at the bottom of the page, is not representative of reality. The time that GeneNetwork3 (or background process) takes for the computations is not actually represented in the breakdown, leading to wildly inaccurate displays of total time.
+
+This will need to be fixed.