diff options
Diffstat (limited to 'issues/genenetwork1')
| -rw-r--r-- | issues/genenetwork1/gn1-mapping-broken.gmi | 19 | ||||
| -rw-r--r-- | issues/genenetwork1/gn1-slowness.gmi | 17 |
2 files changed, 36 insertions, 0 deletions
diff --git a/issues/genenetwork1/gn1-mapping-broken.gmi b/issues/genenetwork1/gn1-mapping-broken.gmi new file mode 100644 index 0000000..6a32053 --- /dev/null +++ b/issues/genenetwork1/gn1-mapping-broken.gmi @@ -0,0 +1,19 @@ +# Marker mapping + +Marker regression is broken with + +``` +Traceback (most recent call last): + File "/gnshare/gn/web/webqtl/cmdLine/webqtlCmdLine.py", line 170, in ? + page = MarkerRegressionPage.MarkerRegressionPage(fd) + File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 203, in __init__ + resultstable,tblobj,bottomInfo = self.GenReport(ChrNameOrderIdDict,fd, _genotype, _strains, _vals, _vars) + File "/gnshare/gn/web/webqtl/cmdLine/../markerRegression/MarkerRegressionPage.py", line 438, in GenReport + qtlresults = _genotype.regression(strains = _strains, trait = _vals) +AttributeError: 'genotype' object has no attribute 'regression' +``` + +## Tags + +* assigned: zachs, pjotrp +* bug diff --git a/issues/genenetwork1/gn1-slowness.gmi b/issues/genenetwork1/gn1-slowness.gmi new file mode 100644 index 0000000..d632f7c --- /dev/null +++ b/issues/genenetwork1/gn1-slowness.gmi @@ -0,0 +1,17 @@ +# GN1 Slowness + +GN1 needs to clean up the following + +``` +GNRoot="/gnshare/gn" +find $GNRoot/web/tmp -mmin +100 -exec rm -rfv {} \; +find $GNRoot/web/image -mmin +100 -exec rm -rfv {} \; +mkdir -p $GNRoot/web/tmp +mkdir -p $GNRoot/web/image +``` + +Note that the -delete switch is much faster than -exec, so + +``` +find $GNRoot/web/image -mmin +100 -delete +``` |