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-rw-r--r--issues/gemma/databases-getting-out-of-wack.gmi16
1 files changed, 14 insertions, 2 deletions
diff --git a/issues/gemma/databases-getting-out-of-wack.gmi b/issues/gemma/databases-getting-out-of-wack.gmi
index 7c3f7ca..291f38e 100644
--- a/issues/gemma/databases-getting-out-of-wack.gmi
+++ b/issues/gemma/databases-getting-out-of-wack.gmi
@@ -7,8 +7,20 @@
* bug
Zachary:
-> Yeah, I think you'd want to get the mean (which is simple) + run qtlreaper
-> (which I think would need to be run in the background) after a change.
+> If we're using GEMMA, we'll need to recalculate all other trait Max LRS scores using
+> GEMMA as well (so I think we should just do this with qtlreaper for now). Otherwise
+> we'll just have a bunch of qtlreaper scores mixed with GEMMA scores without the user
+> having any way of knowing the difference. Also, storing the full results (what Rob
+> calls the "full vector model") will require some sort of fundamental change to the
+> way we store this data and should be postponed for later (since the high priority
+> immediate issue is to ensure that the stored Max LRS values aren't wrong)
+
+> As for Mean, that should be simple, since it's just taking the average of sample values
+> immediately after an update.
+
+> The main thing I'm uncertain how to do (though I know is possible since Bonface already
+> did something like this with GEMMA) is making the code run in the background after an
+> update. It's probably more simple than I'm thinking, though.
Pjotr:
> Current qtlreaper runs in one of Arthur's scripts globally.