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-rw-r--r--issues/gemma/gemma2-has-different-output-from-rqtl2.gmi6
1 files changed, 5 insertions, 1 deletions
diff --git a/issues/gemma/gemma2-has-different-output-from-rqtl2.gmi b/issues/gemma/gemma2-has-different-output-from-rqtl2.gmi
index 0f33b8e..5f04c82 100644
--- a/issues/gemma/gemma2-has-different-output-from-rqtl2.gmi
+++ b/issues/gemma/gemma2-has-different-output-from-rqtl2.gmi
@@ -5,7 +5,7 @@
* assigned: pjotrp, davea
* priority: high
* type: bug, enhancement
-* status: unclear
+* status: closed
* keywords: database, gemma, reaper, rqtl2
# Description
@@ -74,3 +74,7 @@ Warning messages:
```
The first warning matches above. If data is missing it may be filtered out. We'll have to check for that. The third warning I am not sure about. Probably a ranking of markers.
+
+# Conclusion
+
+It turned out that R/qtl was running HK - so it was a QTL mapping rather than an LMM.