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Diffstat (limited to 'issues/csv-metadata-not-commented-out.gmi')
| -rw-r--r-- | issues/csv-metadata-not-commented-out.gmi | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/issues/csv-metadata-not-commented-out.gmi b/issues/csv-metadata-not-commented-out.gmi new file mode 100644 index 0000000..0eac486 --- /dev/null +++ b/issues/csv-metadata-not-commented-out.gmi @@ -0,0 +1,33 @@ +# csv export meta data are not commented out + +## Tags + +* assigned: zsloan +* priority: high +* type: bug +* status: unclear +* keywords: CSV, from github, meta data + +## Description + +=> https://github.com/genenetwork/genenetwork2/issues/594 From GitHub + +csv export data can't be read using the example R code +The csv looks like this: + +``` +Phenotype ID: 11320 +Phenotype URL: http://genenetwork.org/show_trait?trait_id=11320&dataset=BXDPublish +Group: BXD +"Phenotype: Central nervous system"","" pharmacology"","" behavior: Morphine response (50 mg/kg ip)"","" locomotion from 45-60 min after injection in an activity chamber for males [n beam breaks]" +"Authors: Philip VM, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ" +Title: High-throughput behavioral phenotyping in the expanded panel of BXD recombinant inbred strains +"Journal: Genes, Brain & Behavior" +Dataset Link: http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=BXDPublish + +Name,Value,SE,N +BXD1,3125.333,803.776,6 +BXD2,540.167,448.724,6 +``` + +The metadata need to be commented out and the empty line needs to be removed. R expects the first line to be the header. |