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Diffstat (limited to 'issues/correlation_speed_issue.gmi')
| -rw-r--r-- | issues/correlation_speed_issue.gmi | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/issues/correlation_speed_issue.gmi b/issues/correlation_speed_issue.gmi new file mode 100644 index 0000000..714646a --- /dev/null +++ b/issues/correlation_speed_issue.gmi @@ -0,0 +1,17 @@ +# Some correlations running very slowly + +## Tags + +* assigned: zsloan, pjotrp +* type: bug +* priority: high +* status: in-progress +* keywords: correlations, database + +## Description + +Some correlations (it specifically seems to be ones done against ProbeSet databases) are running extremely slowly. + +After looking into this, the cause seemed to be a specific query*, which leads me to think it might be related to the recent DB changes. All the actual calculations only take a couple seconds, but then this query takes like ~80 seconds. + +* https://github.com/genenetwork/genenetwork2/blob/98602d24c64ffafe2c4af150236b72f77709f8de/wqflask/wqflask/correlation/rust_correlation.py#L23-L55 |