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Diffstat (limited to 'issues/correlation-missing-file.gmi')
| -rw-r--r-- | issues/correlation-missing-file.gmi | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/issues/correlation-missing-file.gmi b/issues/correlation-missing-file.gmi new file mode 100644 index 0000000..c12be12 --- /dev/null +++ b/issues/correlation-missing-file.gmi @@ -0,0 +1,12 @@ +# Correlations fail for at least some ProbeSet datasets (as the target dataset) + +## How to reproduce + +- https://genenetwork.org/show_trait?trait_id=P40630_SWEEQMAEVGR_2&dataset=EPFL-ETHZ-BXD-LivProtCD-HF-1119 +- Use the default dataset for correlation (the same as the trait) +- You should get the following error: + +GeneNetwork tux01:gene:2.11-rc2-gn_20221013-4eb4beafd + [Errno 2] No such file or directory: '/home/gn2/production/tmp/gn2/gn2/ProbeSetFreezeId_886_EPFL/ETHZ BXD Liver Proteome CD-HFD (Nov19)' (error) + +This obviously has something to do with the sample data files, though not sure what yet. |