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-rw-r--r--issues/add-mouse-data-from-klaus.gmi19
1 files changed, 4 insertions, 15 deletions
diff --git a/issues/add-mouse-data-from-klaus.gmi b/issues/add-mouse-data-from-klaus.gmi
index 0df02f8..55330b2 100644
--- a/issues/add-mouse-data-from-klaus.gmi
+++ b/issues/add-mouse-data-from-klaus.gmi
@@ -6,10 +6,9 @@
* priority: high
* status: in progress
-### Notes: Thu 30 Jun 2022 17:38:59 EAT
+### Description
-Klaus' recently shared with us some mouse data.
-Here's a snip of how that looks like:
+Klaus' recently shared with us some mouse data. Here's a snip of how that looks like:
```
mouse_ID BW day strain sex inf_dose animal.no.
@@ -25,17 +24,7 @@ mouse_ID BW day strain sex inf_dose animal.no
250 CC001_m_1 90.42 perc_d06 CC001 m 10 FFU 1
```
-I've been working on adding the above to the GN2 database.
-The current challenge I have is that this data is Time Series---for the same strain, we have values indexed by time.
-Also, we tag data by "animal.no." and "sex".
-So for a male version of "CC001" with animal number 1, we have "CC001_m_1".
-This is a problem---storing TS data---that Rob/Suheeta have highlighted in the past.
-How do we go about doing this?
-Currently, in GN2 we store averages of the aforementioned data.
-This doesn't work out well for us: we don't have, AFAIU, a concept for "animal.no."
-I would suggest we use lmdb to store this data, and work out a way to integrate it with the rest of GN2---so that we display this info on the main page.
-
-### Notes: Thu 30 Jun 2022 21:39:15 EAT
+I've been working on adding the above to the GN2 database. The current challenge I have is that this data is Time Series---for the same strain, we have values indexed by time. Also, we tag data by "animal.no." and "sex". So for a male version of "CC001" with animal number 1, we have "CC001_m_1". This is a problem---storing TS data---that Rob/Suheeta have highlighted in the past. How do we go about doing this? Currently, in GN2 we store averages of the aforementioned data. This doesn't work out well for us: we don't have, AFAIU, a concept for "animal.no." I would suggest we use lmdb to store this data, and work out a way to integrate it with the rest of GN2 - so that we display this info on the main page.
Here's how to extract the data from the provided data-set:
@@ -63,7 +52,7 @@ dat10
50 BXD 6_5 89.03000 d1
[...]
```
-### Notes: Thu 30 Jun 2022 21:42:39 EAT
+
Some comments from Zach:
```