diff options
| -rw-r--r-- | tasks/dana.gmi | 3 | ||||
| -rw-r--r-- | tasks/pjotrp.gmi | 9 | ||||
| -rw-r--r-- | tasks/zsloan.gmi | 11 | ||||
| -rw-r--r-- | topics/systems/orchestration.gmi | 6 |
4 files changed, 20 insertions, 9 deletions
diff --git a/tasks/dana.gmi b/tasks/dana.gmi index e6edf35..8edf0b1 100644 --- a/tasks/dana.gmi +++ b/tasks/dana.gmi @@ -11,6 +11,9 @@ ## Tasks * [X] Move tux02 into position p2 +* [ ] Rabbit https and GN2 https +* [ ] get data from summer211.uthsc.edu (access machine room) +* [ ] Decommission out-racked machines => ../issues/systems/decommission-machines.gmi diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi index 0c1d056..577f1ab 100644 --- a/tasks/pjotrp.gmi +++ b/tasks/pjotrp.gmi @@ -13,15 +13,14 @@ The tasks here should probably be broken out into appropriately tagged issues, w ## Tasks -* [ ] Rabbit https and GN2 https -* [ ] fix GN1 images linking to http://www.webqtl.org/array_images/S238-1F1-U74Av2.png +* [ ] Julia with Gregory +* [ ] Pluto tool with Zach => http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=2 +* [ ] Restart luna => ../topics/systems/tux02-production.gmi Set up stable GN service -* [ ] Pluto tool with Zach => ../issues/genenetwork1/gn1-production-system-issues.gmi -* [ ] get data from summer211.uthsc.edu (access machine room) -=> ../issues/data/MIKK-panel.gmi * [ ] GN3: make sure GN3 services are running => ../topics/systems/gn-services.gmi * [ ] GN2: add link to wikidata gene aliases => ../topics/systems/fallbacks-and-backups.gmi +* [ ] fix GN1 images linking to http://www.webqtl.org/array_images/S238-1F1-U74Av2.png diff --git a/tasks/zsloan.gmi b/tasks/zsloan.gmi index 2da0c55..9a50f5c 100644 --- a/tasks/zsloan.gmi +++ b/tasks/zsloan.gmi @@ -4,12 +4,21 @@ * assigned: zsloan * keywords: genewiki -* status: unclear +* status: in progress * priority: unclear ## Tasks +* [ ] Reconnect BNW server +* [X] Set XAPIAN_DB_PATH=/export/data/genenetwork/xapian on tux01 * [ ] Geno files incomplete? => http://gn2.genenetwork.org/api/v_pre1//genotypes/HSNIH-Palmer.geno + * [ ] GN1 migrate genewiki pages => ../issues/genenetwork/genewiki.gmi + +* [ ] Production server is running with mariadb over network + +=> ../issues/data/MIKK-panel.gmi MIKK genotypes + +* [X] Production server is no longer running with DEBUG diff --git a/topics/systems/orchestration.gmi b/topics/systems/orchestration.gmi index bee60c8..833115c 100644 --- a/topics/systems/orchestration.gmi +++ b/topics/systems/orchestration.gmi @@ -8,12 +8,12 @@ What is GN today in terms of services Matching GN3 server and REST endpoint (Python: less dependencies) Mariadb * [X] redis -* [ ] virtuoso +* [X] virtuoso * [X] GN-proxy (Racket, authentication handler: redis, mariadb) * [X] Alias proxy (Racket, gene aliases wikidata) * [X] opar server * [ ] Jupyter, R-shiny and Julia notebooks, nb-hub server -* [ ] BNW server (Octave) +* [X] BNW server (Octave) * [ ] UCSC browser * [X] GN1 instances (older python, 12 instances in principle, 2 running today) * [ ] Access to HPC for GEMMA (coming) @@ -28,7 +28,7 @@ Mariadb Somewhat decoupled services: -* [+] genecup +* [X] genecup * [ ] R/shiny power service Dave * [ ] biohackrxiv * [ ] covid19 |