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-rw-r--r--topics/biohackathon/GNGSoC2023.gmi29
1 files changed, 29 insertions, 0 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi
index 7863bcd..2ede8f7 100644
--- a/topics/biohackathon/GNGSoC2023.gmi
+++ b/topics/biohackathon/GNGSoC2023.gmi
@@ -67,6 +67,11 @@ git repo genenetwork-machines, guix-bioinformatics
* Arun has cgit running on his own server - soon bringing up tux02 after resolving https
+### Week 8
+
+* cgit deployment at https://git.genenetwork.org/
+* guix forge
+
### More
=> https://ci.genenetwork.org/jobs/guix-bioinformatics
@@ -130,6 +135,11 @@ git repo genenetwork3
* RDF improvements with ontology
* Inconsistencies and privacy discussion today
+### Week 8
+
+* Transformed most tables now
+* guile-lmdb started by Alex
+
## LLMs & metadata (RDF)
* lead: Shelby
@@ -178,6 +188,11 @@ git repo genenetwork3
* Working FLASK app ready for testing - Rupert will have a go
+### Week 8
+
+* Working prototype!
+* references as JSON
+
## API to access data from GN
* lead: Rupert
@@ -236,6 +251,11 @@ git repo gn-docs & genenetwork3 & SPARQL
* Test version of API is running at https://luna.genenetwork.org/api/v2.0/
* We'll continue building up facilities
+### Week 8
+
+- R script to parse API by Rupert
+- Move forward with populations/strains and datasets
+
## Editing data
* lead: Fred
@@ -270,6 +290,11 @@ git repo gn-docs & genenetwork3 & SPARQL
* Fred has moved code into a new repo for https://github.com/genenetwork/gn-auth
+### Week 8
+
+* gn-auth is building locally and needs to go on the forge
+* case attributes
+
## Guix parametrization
* lead: Sarthak
@@ -307,6 +332,10 @@ git repo gn-docs & genenetwork3 & SPARQL
* Agreed on final deliverables for GSoC
+### Week 8
+
+* Milestone on dependencies!
+
## Links
* Matrix room is GNSoC2023