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| -rw-r--r-- | topics/biohackathon/GNGSoC2023.gmi | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi index 7863bcd..2ede8f7 100644 --- a/topics/biohackathon/GNGSoC2023.gmi +++ b/topics/biohackathon/GNGSoC2023.gmi @@ -67,6 +67,11 @@ git repo genenetwork-machines, guix-bioinformatics * Arun has cgit running on his own server - soon bringing up tux02 after resolving https +### Week 8 + +* cgit deployment at https://git.genenetwork.org/ +* guix forge + ### More => https://ci.genenetwork.org/jobs/guix-bioinformatics @@ -130,6 +135,11 @@ git repo genenetwork3 * RDF improvements with ontology * Inconsistencies and privacy discussion today +### Week 8 + +* Transformed most tables now +* guile-lmdb started by Alex + ## LLMs & metadata (RDF) * lead: Shelby @@ -178,6 +188,11 @@ git repo genenetwork3 * Working FLASK app ready for testing - Rupert will have a go +### Week 8 + +* Working prototype! +* references as JSON + ## API to access data from GN * lead: Rupert @@ -236,6 +251,11 @@ git repo gn-docs & genenetwork3 & SPARQL * Test version of API is running at https://luna.genenetwork.org/api/v2.0/ * We'll continue building up facilities +### Week 8 + +- R script to parse API by Rupert +- Move forward with populations/strains and datasets + ## Editing data * lead: Fred @@ -270,6 +290,11 @@ git repo gn-docs & genenetwork3 & SPARQL * Fred has moved code into a new repo for https://github.com/genenetwork/gn-auth +### Week 8 + +* gn-auth is building locally and needs to go on the forge +* case attributes + ## Guix parametrization * lead: Sarthak @@ -307,6 +332,10 @@ git repo gn-docs & genenetwork3 & SPARQL * Agreed on final deliverables for GSoC +### Week 8 + +* Milestone on dependencies! + ## Links * Matrix room is GNSoC2023 |