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| -rw-r--r-- | topics/quality-control/qc-checks.gmi | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/topics/quality-control/qc-checks.gmi b/topics/quality-control/qc-checks.gmi index 55b4847..f2e47fd 100644 --- a/topics/quality-control/qc-checks.gmi +++ b/topics/quality-control/qc-checks.gmi @@ -2,6 +2,18 @@ 1. Gene Symbols to ProbeSetId (Affymetrix format): +We favour using Illumina, Affimetrix, and other platform formats. + +Custom formats require a new annotation file to be created. + +We usually use Ensemble ID or Gene IDs. + +1.1 Ensemble transcript IDs usually have duplicates that need to be pruned. + +ENSMBL1234 + +## Example Gene Symbol to ProbeSetId + AFFX-BkGr-GC03_st -> TCO500002136.mm.2 2. Inbred Strain names should prefer long form: |