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-rw-r--r--topics/quality-control/qc-checks.gmi12
1 files changed, 12 insertions, 0 deletions
diff --git a/topics/quality-control/qc-checks.gmi b/topics/quality-control/qc-checks.gmi
index 55b4847..f2e47fd 100644
--- a/topics/quality-control/qc-checks.gmi
+++ b/topics/quality-control/qc-checks.gmi
@@ -2,6 +2,18 @@
1. Gene Symbols to ProbeSetId (Affymetrix format):
+We favour using Illumina, Affimetrix, and other platform formats.
+
+Custom formats require a new annotation file to be created.
+
+We usually use Ensemble ID or Gene IDs.
+
+1.1 Ensemble transcript IDs usually have duplicates that need to be pruned.
+
+ENSMBL1234
+
+## Example Gene Symbol to ProbeSetId
+
AFFX-BkGr-GC03_st -> TCO500002136.mm.2
2. Inbred Strain names should prefer long form: