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| -rw-r--r-- | topics/biohackathon/GNGSoC2023.gmi | 22 |
1 files changed, 13 insertions, 9 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi index 2bdeaef..f1377a7 100644 --- a/topics/biohackathon/GNGSoC2023.gmi +++ b/topics/biohackathon/GNGSoC2023.gmi @@ -1,4 +1,4 @@ -# GNGSoC 2023 +# GNSoC 2023 GN Summer of Code @@ -37,9 +37,13 @@ git repo genenetwork-machines, guix-bioinformatics * RISC-V port progressing with node and zig 0.10 * guix-bioinformatics now has CI! -* ~700 packages, 300 are broken ;) +* ~700 packages, 240 are broken ;) + +=> https://ci.genenetwork.org/jobs/guix-bioinformatics + * CI/CD is up and running again (and broken) * Rethink: channels and pull channels are used for CI/CD +* Move unused packages elsewhere ## Nextgen databases @@ -66,8 +70,8 @@ git repo genenetwork3 ### Week 2 * RDF structure to markdown dump -* Fred running SPARQL queries -* Alex lmdb phenotype API endpoints +* Fred is running SPARQL queries +* Alex is adding lmdb phenotype API endpoints ## LLMs & metadata (RDF) @@ -87,9 +91,9 @@ git repo genenetwork3 ### Week 2 -* API is working mostly +* Open AI API is working * Shelby is integrating into a Flask interface for GeneNetwork -* Pubmed UI style +* Using a pubmed UI style ## API to access data from GN @@ -112,9 +116,9 @@ git repo gn-docs & genenetwork3 & SPARQL * Ideas on structuring * Questions on GN * Next: unify access to information - - collecting questions from users - - settle on form of API - - create example URLs for mouse +* collecting questions from users +* settle on form of API +* create example URLs for mouse ### Week 2 |