diff options
| -rw-r--r-- | tasks/pjotrp.gmi | 6 | ||||
| -rw-r--r-- | topics/systems/fire-up-genenetwork-system-container.gmi | 11 |
2 files changed, 14 insertions, 3 deletions
diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi index aabac07..f53e610 100644 --- a/tasks/pjotrp.gmi +++ b/tasks/pjotrp.gmi @@ -30,7 +30,7 @@ Now (X=done +=WIP _=kickoff ?=?) * [+] Build GN consortium * [+] gBAM * [+] Set up stable GeneNetwork server instance with new hardware (see below) -* [ ] Complete Octopus setup with Erik, Andrea and Efraim - adding all machines +* [X] Complete Octopus setup with Erik, Andrea and Efraim - adding all machines * [ ] Audit DB security * [ ] p-value global search @@ -44,7 +44,7 @@ Now (X=done +=WIP _=kickoff ?=?) * [ ] Add R/qtl2 and multi-parent support with Karl (DO and Magic populations) * [ ] Fix slow search on Mariadb? -* [+] Shelby's application (fall) +* [+] Shelby's application * [.] GeneNetwork paper * + [ ] add FAIR statement * [ ] RISC-V trials @@ -52,7 +52,7 @@ Now (X=done +=WIP _=kickoff ?=?) Longer term -* [+] Aging grant application w. Rob (fall) +* [X] Aging grant application w. Rob (fall) * [ ] Drive for stability of GN tools (particularly GEMMA OOMP) * [+] AraQTL and WormQTL2 embedding * [+] Work on REST API diff --git a/topics/systems/fire-up-genenetwork-system-container.gmi b/topics/systems/fire-up-genenetwork-system-container.gmi index bb2e55e..11cd9d2 100644 --- a/topics/systems/fire-up-genenetwork-system-container.gmi +++ b/topics/systems/fire-up-genenetwork-system-container.gmi @@ -14,6 +14,7 @@ We have the following check list * [ ] Create a system definition * [ ] Fire up container and get a shell inside using nsenter * [ ] Start mariadb +* [ ] Start redis ## Create a system definition @@ -129,3 +130,13 @@ herd start mysql | db_webqtl_s | +---------------------------+ ``` + +Once I got this working, however, I decided to run mariadb on the base system instead (outside the container). The same with redis (see below). + +# Start redis + +After adding the default redis-service make sure the database is mounted on /var/lib/redis. `herd status` in the container will tell redis is running. + +Note that, again, file permissions may prevent redis from running. Debug output appears in /var/log/messages. + +The way to deal with this is chown in the activation stage. The alternative is to run a service directly on the host machine. |