diff options
| -rw-r--r-- | issues/systems/apps.gmi | 2 | ||||
| -rw-r--r-- | tasks/alexm.gmi | 1 | ||||
| -rw-r--r-- | tasks/pjotrp.gmi | 24 |
3 files changed, 17 insertions, 10 deletions
diff --git a/issues/systems/apps.gmi b/issues/systems/apps.gmi index 51c9d24..9aad05a 100644 --- a/issues/systems/apps.gmi +++ b/issues/systems/apps.gmi @@ -184,7 +184,7 @@ and it looks like lines like these need to be updated: => https://github.com/genenetwork/singleCellRshiny/blob/6b2a344dd0d02f65228ad8c350bac0ced5850d05/app.R#L167 -Let me ask the author Siamak Yousefi. +Let me ask the author Siamak Yousefi. I think we'll drop it. ## jumpshiny diff --git a/tasks/alexm.gmi b/tasks/alexm.gmi index b3031d3..15dc72b 100644 --- a/tasks/alexm.gmi +++ b/tasks/alexm.gmi @@ -27,6 +27,7 @@ You can refine the search by constraining the checks some more, e.g. to get high ## Next week(s) +* Check and fix CTL? * [+] Create terminal output for external processes (Rqtl1, Rqtl2, pair-scan are done --- WGCNA as a pilot, with @bonfacem and @pjotrp) * [ ] GNQA says there are no results, but has them diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi index e5e25fe..f19b919 100644 --- a/tasks/pjotrp.gmi +++ b/tasks/pjotrp.gmi @@ -16,6 +16,8 @@ * [+] create backup server with @fredm * [+] Moni builds 1U01HG013760 * [+] test framework wfmash - vertebrate tree and HPC compute? +* - wfmash - wgatools -> PAF + FASTA to VCF +* - wfmash arch=native build * [ ] gbam - data compression with Nick and Hasithak * [ ] accelerate wfmash with @santiago and team * [ ] package wfmash and Rust wfa2-lib @@ -31,25 +33,29 @@ ## Systems +* [ ] jumpshiny +* [ ] pluto * [ ] Backup production databases on Tux04 -* - [ ] Dump redis -* - [ ] Dump sqlite -* - [ ] Dump mariadb +* - [+] Dump containers w. databases +* - [X] Dump mariadb +* - [ ] backup remote +* - [ ] borg-borg +* - [ ] fix root scripts * [ ] make sure production is up to scratch (see stable below) * [ ] synchronize git repos for public, CD, fallback and production using sheepdog and document * [ ] drop tux02 backups on balg01 -* [ ] drop backups in NL -* [ ] reintroduce borg-borg * [X] Small database public ## Ongoing tasks (current/urgent) +* [ ] ~Felix, Alex, Rahul as friends of UTHSC * [ ] Precompute -* [+] Set up stable GeneNetwork server instance with new hardware (see below) -=> /topics/systems/fire-up-genenetwork-system-container.gmi * [ ] Check email setup tux04 -* [+] Julia as part of GN3 deployment +* [ ] jbrowse plugin code - https://genenetwork.trop.in/mm10 +* [+] bulklmm Julia as part of GN3 deployment => /topics/deploy/julia.gmi +* [X] Set up stable GeneNetwork server instance with new hardware (see below) +=> /topics/systems/fire-up-genenetwork-system-container.gmi # Tasks @@ -85,7 +91,7 @@ Longer term Later * [ ] Mempang25 1U01HG013760 - + [ ] Invites + + [X] Invites + [ ] Payments + [ ] Rooms + [ ] Catering |