diff options
| -rw-r--r-- | tasks/bonfacem.gmi | 25 |
1 files changed, 17 insertions, 8 deletions
diff --git a/tasks/bonfacem.gmi b/tasks/bonfacem.gmi index a64639e..7e78faf 100644 --- a/tasks/bonfacem.gmi +++ b/tasks/bonfacem.gmi @@ -9,26 +9,30 @@ ## Tasks ### Note -- Check small db from: https://files.genenetwork.org/database/ -- View diffs in BXD: Edit case attributes throws an error. + - Assess adding GeneRIF to LLM. -- Referrer headers -- a way of preventing bots beyond rate-limiting. +- Referrer headers -- a way of preventing bots beyond rate-limiting. ### This week - +* [ ] LMDB database. +* - Simplify (focus on small files). Don't over-rely on Numpy. +* - Try computations with R/qtl2 +* - Look at R LMDB libraries * [+] Case Attributes (Do a diagnostic and delegate) * - Error when checking the history. +* - Reach out to Zach. +* - Disable RIF editing in the UI * [+] Correlations hash. * - Add dataset count to RDF. * [ ] Spam + LLMs * - RateLimiting for Rif Editing -* [ ] Finish container work -* [ ] Assess Brian's repo for deployment. -* [ ] Changes to Production + (Alex) -* [ ] gn-auth fixes +* [+] Changes to Production + (Alex) + ### Later + * [ ] Send emails when job fail. +* [ ] Look at updating gn-auth/gn-libs to PYTHONPATH for gn2/3. * [ ] Sample/individual/strain/genometype counts for PublishData only - ProbeSetData? https://github.com/genenetwork/genenetwork2/blob/testing/scripts/sample_count.py - mirror in RDF and use global search * - search for all traits that have more than X samples * [ ] Add case attributes to RDF and share with Felix (depends on @felixl) @@ -107,3 +111,8 @@ Currently closed issues are: * 2. Work on production w. Fred * [X] Distinguish CD from production -- banners/buttons/colors. * [X] Use aider - give a presentation in the coming weeks +* [X] gn-auth fixes +* [X] Assess Brian's repo for deployment. +* [X] Finish container work +* - View diffs in BXD: Edit case attributes throws an error. +* [X] Check small db from: https://files.genenetwork.org/database/ |