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| -rw-r--r-- | issues/fix-missing-genotype-files-for-gemma.gmi | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/issues/fix-missing-genotype-files-for-gemma.gmi b/issues/fix-missing-genotype-files-for-gemma.gmi new file mode 100644 index 0000000..5038f3c --- /dev/null +++ b/issues/fix-missing-genotype-files-for-gemma.gmi @@ -0,0 +1,24 @@ +# Fix Missing Genotype Files for GEMMA + +## Tags + +* assigned: +* priority: medium +* type: bug +* status: pending +* keywords: gemma, technical debt + +## Description + +Run GEMMA (under "Mapping Tools") for +=> https://cd.genenetwork.org/show_trait?trait_id=1436869_at&dataset=HC_M2_0606_P + +As of commit +=> 9cd9b914 https://github.com/genenetwork/genenetwork2/commit/9cd9b91412734f8f084439690082f9e699ebd89e +the run will fail with an error. + +## Steps + +* [ ] Add mechanical-rob tests to check that run is successful +* [ ] Improve error message to indicate what genotype file is missing +* [ ] If there's a missing genotype file, ensure the test checks that the missing file is mentioned in the error report |