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| -rw-r--r-- | issues/dump-datasets-to-lmdb.gmi | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/issues/dump-datasets-to-lmdb.gmi b/issues/dump-datasets-to-lmdb.gmi new file mode 100644 index 0000000..c46a8bd --- /dev/null +++ b/issues/dump-datasets-to-lmdb.gmi @@ -0,0 +1,15 @@ +# Dump Data to LMDB + +Correlations are slow. As of Tuesday April 4, 2023 at 1:37pm: + +GN1 took *29 sec* (completed) vs GN2 *38 sec* (completed) for 1457545_at in the Hippocampus Consortium M430v2 (Jun06) PDNN + +=> http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=112 Hippocampus Consortium M430v2 (Jun06) PDNN + +GN1 took *1.56 mins* (completed) vs GN2 *5.24 mins* (completed) for 10528873 in the UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level + +=> https://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=UTHSC_BXD_H_0912 UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level + +Research Question: What effect would using LMDB have on correlations over text-file caching and sql fetches? + +* assigned: bonfacem, alexm |