diff options
| -rw-r--r-- | issues/linking_genotype-files-to-datasets.gmi | 33 |
1 files changed, 32 insertions, 1 deletions
diff --git a/issues/linking_genotype-files-to-datasets.gmi b/issues/linking_genotype-files-to-datasets.gmi index d6fdccb..03a302f 100644 --- a/issues/linking_genotype-files-to-datasets.gmi +++ b/issues/linking_genotype-files-to-datasets.gmi @@ -5,7 +5,7 @@ * assigned: alexm * type: debug * priority: high -* status: in progrss +* status: in progress ## Notes @@ -14,4 +14,35 @@ A dataset can have multiple groups. In order to fetch all possible sample data f As an example example the dataset HC_M2_0606_P is of type Probeset and linked groups for this dataset include (bxd,others) that would translate to these genofiles BXD.geno etc +## Species relationship to groups/ +A dataset has got species for example (mouse,human) +Similary a species can have multiple groups/families +Example-> Species(mouse) ->Families(BXD family, B6D2RI, B6D2F2) -> Genofiles related to this (BXD.geno, B6D2RI.geno, B6D2F2.geno) + +* How to fetch Families given a species + +```sql +SELECT InbredSet.Name, InbredSet.FullName +FROM InbredSet, Species WHERE Species.Name = 'mouse' +AND InbredSet.SpeciesId = Species.Id GROUP by +InbredSet.Name ORDER BY IFNULL(InbredSet.FamilyOrder, +InbredSet.FullName) ASC, IFNULL(InbredSet.Family, +InbredSet.FullName) ASC, InbredSet.FullName ASC, +InbredSet.MenuOrderId ASC + +``` + +* Limit you fetch to specified type for Dataset +Example of types Probeset,Publish + + +```sql + +select InbredSet.Name, InbredSet.FullName from InbredSet,Species, +ProbeFreeze where Species.Name = 'mouse' +and InbredSet.SpeciesId = Species.Id and +(ProbeFreeze.InbredSetId = InbredSet.Id) +group by InbredSet.Name +order by InbredSet.FullName +``` |