9 files changed, 51 insertions, 9 deletions
diff --git a/issues/correlation-timing-out.gmi b/issues/correlation-timing-out.gmi
index 419524d..bed8692 100644
--- a/issues/correlation-timing-out.gmi
+++ b/issues/correlation-timing-out.gmi
@@ -5,7 +5,7 @@
 * assigned: fredm, zsloan, alexm
 * type: bug
 * priority: high
-* status: ongoing
+* status: closed, completed
 * keywords: correlations
 
 ## Description
@@ -17,3 +17,7 @@ Do correlations against the same dataset
 This might be the same issue as the one in
 => /issues/correlation-missing-file correlation-missing-file.gmi
 but I'm not sure.
+
+## Close as completed
+
+This is fixed.
diff --git a/issues/fix-spam-entries-in-gn-auth-production.gmi b/issues/fix-spam-entries-in-gn-auth-production.gmi
index db88eec..5ef7a42 100644
--- a/issues/fix-spam-entries-in-gn-auth-production.gmi
+++ b/issues/fix-spam-entries-in-gn-auth-production.gmi
@@ -2,6 +2,7 @@
 
 # Tags
 
+* status: closed, completed
 * assigned: fredm
 * keywords: auth
 
@@ -13,4 +14,8 @@ We have spam entries in gn-auth in production in the groups table:
 b59229de-2fce-4a3d-82f1-d9eeee9b7009|Business For Sale Adelaide|{"group_description": "Welcome to Business2Sell, the ultimate online platform for those seeking affordable business opportunities in Adelaide. As a trusted first-party provider, we offer the ideal marketplace for buying or selling businesses across the country. Whether you're an aspiring entrepreneur looking for your next venture or a business owner ready to sell, Business2Sell provides the perfect platform for you. Our user-friendly interface and extensive listings make it effortless to discover a wide range of businesses, all within your budget. Join our vibrant community of buyers and sellers today, and let us help you achieve your business goals in Adelaide with ease and confidence.\r\nhttps://www.business2sell.com.au/businesses/sa/adelaide"}
 ```
 
+## Close as completed
 
+We added email verification when registering, which should help reduce the success of these automated bots.
+
+We also added tooling to help with users and groups management, which is helping clean up these spam data.
diff --git a/issues/genenetwork2/handle-oauth-errors-better.gmi b/issues/genenetwork2/handle-oauth-errors-better.gmi
index 462ded5..77ad7ad 100644
--- a/issues/genenetwork2/handle-oauth-errors-better.gmi
+++ b/issues/genenetwork2/handle-oauth-errors-better.gmi
@@ -3,7 +3,7 @@
 ## Tags
 
 * type: bug
-* status: open
+* status: closed, completed
 * priority: high
 * assigned: fredm
 * interested: zachs, robw
@@ -15,3 +15,7 @@ When a session expires, for whatever reason, a notification is displayed to the
 => ./session_expiry_oauth_error.png
 
 The message is a little jarring to the end user. Make it gentler, and probably more informative, so the user is not as surprised.
+
+## Close as complete
+
+This should be fixed at this point. Closing this as complete.
diff --git a/issues/genenetwork3/rqtl2-mapping-error.gmi b/issues/genenetwork3/rqtl2-mapping-error.gmi
index 480c7c6..b43d66f 100644
--- a/issues/genenetwork3/rqtl2-mapping-error.gmi
+++ b/issues/genenetwork3/rqtl2-mapping-error.gmi
@@ -3,7 +3,7 @@
 ## Tags
 
 * type: bug
-* status: open
+* status: closed, completed
 * priority: high
 * assigned: alexm, zachs, fredm
 * keywords: R/qtl2, R/qtl2 Maps, gn3, genetwork3, genenetwork 3
@@ -40,3 +40,7 @@ This might imply a code issue: Perhaps
 * the wrong path value is passed
 
 The same error occurs on https://cd.genenetwork.org but does not seem to prevent CD from running the mapping to completion. Maybe something is missing on production — what, though?
+
+## Closed as Completed
+
+This seems fixed now.
diff --git a/issues/gn-auth/rework-view-resource-page.gmi b/issues/gn-auth/rework-view-resource-page.gmi
index fcf5c5a..2d6e145 100644
--- a/issues/gn-auth/rework-view-resource-page.gmi
+++ b/issues/gn-auth/rework-view-resource-page.gmi
@@ -2,7 +2,7 @@
 
 ## Tags
 
-* status: open
+* status: closed, completed
 * priority: medium
 * type: enhancement
 * assigned: fredm, zsloan
@@ -15,3 +15,8 @@ The view resource page ('/oauth2/resource/<uuid>/view') was built with only Geno
 We have since moved on, and added more types of resources (group, system, inbredset-group, etc). This leads to the page breaking for these other types of resources.
 
 We need to update the UI and route to ensure the page renders correctly for each type, or at the very least, redirects to the correct page (e.g. in the case of groups, which have a separate "view group" page).
+
+
+## Close as complete
+
+This is fixed now.
diff --git a/issues/gn-uploader/link-authentication-authorisation.gmi b/issues/gn-uploader/link-authentication-authorisation.gmi
index 90b8e5e..b64f887 100644
--- a/issues/gn-uploader/link-authentication-authorisation.gmi
+++ b/issues/gn-uploader/link-authentication-authorisation.gmi
@@ -2,7 +2,7 @@
 
 ## Tags
 
-* status: open
+* status: closed, completed
 * assigned: fredm
 * priority: critical
 * type: feature request, feature-request
@@ -13,3 +13,9 @@
 The last chain in the link to the uploads is the authentication/authorisation. Once the user uploads their data, they need access to it. The auth system, by default, will deny anyone/everyone access to any data that is not linked to a resource and which no user has any roles allowing them access to the data.
 
 We, currently, assign such data to the user manually, but that is not a sustainable way of working, especially as the uploader is exposed to more and more users.
+
+### Close as Completed
+
+The current iteration of the uploader does actually take into account the user that is uploading the data, granting them ownership of the uploaded data. By default, the data is not public, and is only accessible to the user who uploaded it.
+
+The user who uploads the data (and therefore own it) can later grant access to other users of the system.
diff --git a/issues/gn-uploader/provide-page-for-uploaded-data.gmi b/issues/gn-uploader/provide-page-for-uploaded-data.gmi
index 60b154b..5ab7f80 100644
--- a/issues/gn-uploader/provide-page-for-uploaded-data.gmi
+++ b/issues/gn-uploader/provide-page-for-uploaded-data.gmi
@@ -2,7 +2,7 @@
 
 ## Tags
 
-* status: open
+* status: closed, completed
 * assigned: fredm
 * priority: medium
 * type: feature, feature request, feature-request
@@ -20,3 +20,8 @@ Once a user has uploaded their data, provide them with a landing page/dashboard
 Depends on
 
 => /issues/gn-uploader/link-authentication-authorisation
+
+
+## Close as complete
+
+Current uploader directs user to a view of the data they uploader on GN2. This is complete.
diff --git a/issues/provide-link-to-register-user-in-sign-in-page.gmi b/issues/provide-link-to-register-user-in-sign-in-page.gmi
index 24d7c21..b9e6a4d 100644
--- a/issues/provide-link-to-register-user-in-sign-in-page.gmi
+++ b/issues/provide-link-to-register-user-in-sign-in-page.gmi
@@ -3,7 +3,7 @@
 ## Tags
 
 * type: bug
-* status: open
+* status: closed
 * assigned: fredm
 * priority: medium
 * keywords: register user, gn-auth, genenetwork
@@ -16,3 +16,8 @@ Provide a link allowing a user to register with the system on the sign-in page.
 We are now using OAuth2 to enable sign-in, which means that the user is redirected from the service they were in to the authorisation service to sign-in.
 
 The service should retain a note of the service which the user came from, and redirect back to it on successful registration.
+
+
+### Close as Completed
+
+@zachs seems to have fixed this.
diff --git a/issues/quality-control/r-qtl2-features.gmi b/issues/quality-control/r-qtl2-features.gmi
index eac53c4..bcc5d71 100644
--- a/issues/quality-control/r-qtl2-features.gmi
+++ b/issues/quality-control/r-qtl2-features.gmi
@@ -3,7 +3,7 @@
 ## Tags
 
 * type: listing
-* status: open
+* status: closed, completed
 * assigned: fredm
 * priority: high
 * keywords: listing, bug, feature
@@ -12,5 +12,9 @@
 
 This is a listing of non-critical features and bugs that do not currently have a dedicated issue, and need to be handled some time in the future.
 
-* [feature] "Undo Transpose": Files marked as '*_transposed: true' will have the transposition undone to ease processing down the line.
+* Closed, completed: [feature] "Undo Transpose": Files marked as '*_transposed: true' will have the transposition undone to ease processing down the line.
 * …
+
+### Close as completed
+
+Actually open dedicated issues for bugs and features rather than collecting them here.