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| -rw-r--r-- | topics/biohackathon/GNGSoC2023.gmi | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi index 8df2039..623a6c6 100644 --- a/topics/biohackathon/GNGSoC2023.gmi +++ b/topics/biohackathon/GNGSoC2023.gmi @@ -54,6 +54,11 @@ git repo genenetwork-machines, guix-bioinformatics * cgit * Efraim: gn2 -> channel; Arun tested +### Week 5 + +* Added Klaus server for git +* Fixed channels to work wit Python 3.9 instead of 3.10 + ### More => https://ci.genenetwork.org/jobs/guix-bioinformatics @@ -102,6 +107,13 @@ git repo genenetwork3 * Started work on lmdb+guile: => https://github.com/BonfaceKilz/gn-data-vault +### Week 5 + +* Metadata - renamed prefixes +* Short names gn: gnt: +* Updated virtuoso +* parsing geno files - lmdb support + ## LLMs & metadata (RDF) * lead: Shelby @@ -137,6 +149,11 @@ git repo genenetwork3 * fetched 1000 publication * JSON documentation on references +### Week 5 + +* Guix container for LLM +* Expose container to Rupert +* Add a password ## API to access data from GN @@ -182,6 +199,10 @@ git repo gn-docs & genenetwork3 & SPARQL * R api - reference GN/API * synteny +### Week 5 + +* Added back-end support for wikidata - finding inconsistencies + ## Editing data * lead: Fred @@ -203,6 +224,12 @@ git repo gn-docs & genenetwork3 & SPARQL * Editing works! * Discussed the approval procedure and edit button for everyone +### Week 5 + +* Editing has gone on production - fixing issues +* Discussion on REST API + + ## Guix parametrization * lead: Sarthak @@ -228,6 +255,10 @@ git repo gn-docs & genenetwork3 & SPARQL * BLOG in a stage that we discuss naming conventions +### Week 5 + +* Proposed DSL for parameters + ## Links * Matrix room is GNSoC2023 |