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| -rw-r--r-- | topics/gn1-migration-to-gn2/partial-correlations.gmi | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/topics/gn1-migration-to-gn2/partial-correlations.gmi b/topics/gn1-migration-to-gn2/partial-correlations.gmi index e2d47f8..f7b6cb1 100644 --- a/topics/gn1-migration-to-gn2/partial-correlations.gmi +++ b/topics/gn1-migration-to-gn2/partial-correlations.gmi @@ -27,3 +27,36 @@ That gives you a list of hits. ## Tags * assigned: fredm + +## Notes + +### 2021-10-15: fredm + +The example in the description above says to pick 3 traits from the search results to use for the partial correlation. + +If you, however, find need to pick more than 3 traits, the following things are of note: + +* There can only ever be a single **Primary** trait: if the user selects more than one, indicate an error +* There can only ever be a maximum of 3 **Control** traits: if the user selects more than three, indicate an error +* For **Pearson's r** and **Spearman's rho** computations (the buttons immediately below the table), there must be at least one Target trait. If the user does not provide any, indicate an error + +In the lower half, the user can select the database against which the partial correlations are to be run. I still need to figure what this is about - probably read the code and ask a lot of questions as necessary. + +The user can also select what to calculate, from the following list: + +* Genetic Correlation, Pearson's r +* Genetic Correlation, Spearman's rho +* SGO Literature Correlation +* Tissue Correlation, Pearson's r +* Tissue Correlation, Spearman's rho + +There is no indication,on the UI, of the difference between the **Pearson's r** and **Spearman's rho** with the buttons, and those in the list in the lower half of the page. + +The user can also select the total number of results to return + +#### Possible Correlation Errors + +* Tissue Correlation Error +* Literature Correlation Error + +Maybe there is even a **Genetic Correlation Error**, but I am yet to run into it - I am simply extrapolating from my exploration with the existing system. |