diff options
| -rw-r--r-- | issues/genenetwork2/broken-collections-features.gmi | 1 | ||||
| -rw-r--r-- | issues/genenetwork3/generate-heatmaps-failing.gmi | 34 |
2 files changed, 35 insertions, 0 deletions
diff --git a/issues/genenetwork2/broken-collections-features.gmi b/issues/genenetwork2/broken-collections-features.gmi index 129c3e9..4239929 100644 --- a/issues/genenetwork2/broken-collections-features.gmi +++ b/issues/genenetwork2/broken-collections-features.gmi @@ -41,3 +41,4 @@ There are some features in the search results page, and/or the collections page We break-out the issues above into separate pages to track the progress of the fixes for each feature separately. => /issues/genenetwork3/ctl-maps-error +=> /issues/genenetwork3/generate-heatmaps-failing diff --git a/issues/genenetwork3/generate-heatmaps-failing.gmi b/issues/genenetwork3/generate-heatmaps-failing.gmi index 03256e6..522dc27 100644 --- a/issues/genenetwork3/generate-heatmaps-failing.gmi +++ b/issues/genenetwork3/generate-heatmaps-failing.gmi @@ -28,3 +28,37 @@ On https://gn2-fred.genenetwork.org the heatmaps fails with a note ("ERROR: unde => https://github.com/scipy/scipy/issues/19972 This issue should not be present with python-plotly@5.20.0 but since guix-bioinformatics pins the guix version to `b0b988c41c9e0e591274495a1b2d6f27fcdae15a`, we are not able to pull in newer versions of packages from guix. + + +### Update 2025-04-08T10:59CDT + +Got the following error when I ran the background command manually: + +``` +$ export RUST_BACKTRACE=full +$ /gnu/store/dp4zq4xiap6rp7h6vslwl1n52bd8gnwm-profile/bin/qtlreaper --geno /home/frederick/genotype_files/genotype/genotype/BXD.geno --n_permutations 1000 --traits /tmp/traits_test_file_n2E7V06Cx7.txt --main_output /tmp/qtlreaper/main_output_NGVW4sfYha.txt --permu_output /tmp/qtlreaper/permu_output_MJnzLbrsrC.txt +thread 'main' panicked at src/regression.rs:216:25: +index out of bounds: the len is 20 but the index is 20 +stack backtrace: + 0: 0x61399d77d46d - <unknown> + 1: 0x61399d7b5e13 - <unknown> + 2: 0x61399d78b649 - <unknown> + 3: 0x61399d78f26f - <unknown> + 4: 0x61399d78ee98 - <unknown> + 5: 0x61399d78f815 - <unknown> + 6: 0x61399d77d859 - <unknown> + 7: 0x61399d77d679 - <unknown> + 8: 0x61399d78f3f4 - <unknown> + 9: 0x61399d6f4063 - <unknown> + 10: 0x61399d6f41f7 - <unknown> + 11: 0x61399d708f18 - <unknown> + 12: 0x61399d6f6e4e - <unknown> + 13: 0x61399d6f9e93 - <unknown> + 14: 0x61399d6f9e89 - <unknown> + 15: 0x61399d78e505 - <unknown> + 16: 0x61399d6f8d55 - <unknown> + 17: 0x75ee2b945bf7 - __libc_start_call_main + 18: 0x75ee2b945cac - __libc_start_main@GLIBC_2.2.5 + 19: 0x61399d6f4861 - <unknown> + 20: 0x0 - <unknown> +``` |