diff options
| -rw-r--r-- | issues/genenetwork/containerising-production-issues.gmi | 4 | ||||
| -rw-r--r-- | issues/genenetwork/python-requests-error-in-container.gmi | 27 |
2 files changed, 29 insertions, 2 deletions
diff --git a/issues/genenetwork/containerising-production-issues.gmi b/issues/genenetwork/containerising-production-issues.gmi index 883f52a..6ddb3c1 100644 --- a/issues/genenetwork/containerising-production-issues.gmi +++ b/issues/genenetwork/containerising-production-issues.gmi @@ -24,9 +24,9 @@ The link above documents the various services that make up the GeneNetwork servi ## Issues * [x] Move user directories to a large partition -* [ ] Link TMPDIR in container to a directory on a large partition +=> ./handle-tmp-dirs-in-container [ ] Link TMPDIR in container to a directory on a large partition => ./markdown-editing-service-not-deployed [x] Define and deploy Markdown Editing service => ./umhet3-samples-timing-slow [ ] Figure out and fix UM-HET3 Samples mappings on Tux04 => ./setup-mailing-on-tux04 [x] Setting up email service on Tux04 => ./virtuoso-shutdown-clears-data [x] Virtuoso seems to lose data on restart -=> ./handle-tmp-dirs-in-container [ ] Handle temporary directories in the container +=> ./python-requests-error-in-container [ ] Fix python's requests library certificates error diff --git a/issues/genenetwork/python-requests-error-in-container.gmi b/issues/genenetwork/python-requests-error-in-container.gmi new file mode 100644 index 0000000..2517af1 --- /dev/null +++ b/issues/genenetwork/python-requests-error-in-container.gmi @@ -0,0 +1,27 @@ +# Python Requests Error in Container + +## Tags + +* type: bug +* status: open +* assigned: fredm +* priority: critical +* interested: alexk, aruni, bonfacem, pjotrp, zsloan +* keywords: production, container, tux04, python, requests + +## Description + +Building the container with the +=> https://git.genenetwork.org/guix-bioinformatics/commit/?id=eb7beb340a9731775e8ad177e47b70dba2f2a84f upgraded guix definition +leads to python's requests library failing. + +``` +2024-10-30 16:04:13 OSError: Could not find a suitable TLS CA certificate bundle, invalid path: /etc/ssl/certs/ca-certificates.crt +``` + +If you login to the container itself, however, you find that the file `/etc/ssl/certs/ca-certificates.crt` actually exists and has content. + +Possible fixes suggested are to set up correct envvars for the requests library, such as `REQUESTS_CA_BUNDLE` + +See +=> https://requests.readthedocs.io/en/latest/user/advanced/#ssl-cert-verification |