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| -rw-r--r-- | tasks/felixl.gmi | 23 |
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diff --git a/tasks/felixl.gmi b/tasks/felixl.gmi index 5a8662f..b5e34c8 100644 --- a/tasks/felixl.gmi +++ b/tasks/felixl.gmi @@ -133,6 +133,29 @@ * [ ] - upload kilifish to genenetwork * [ ] - revise celegans smoothing (genotypes) +* ## this week (07-07-onwards) +* [X] - generate haplotypes for offsprings and founders combined; intepretation next.., +* [+] - keep improving the uploader via data uploading and error solving +* [-] - close smoothing revision for celegans, as left before +* [X] - why should people read my paper on improving genotyping methods? +* - on smoothing (low density genotypes for mapping, high density genotypes for fine mapping.,) +* - liftovers due to reference versions (currently, a challenge to be looked upon) +* - founders and their offsprings in genotyping +* - pangenomics and machine learning for improved genotyping + +** keys (+; in progress, X; done, -; not yet) +* ## this week (14-07-onwards) +* [+] - map founders to offspring, work with only pure recombiantions + [+] - tools available? (plink, rqtl2, beagle, etc) + [+] - custom pipeline, to reflect gaps in the existing tools? (dealing with multiparent species) + [+] - documentation for the paper write up + +* ## this week (21-07-onwards) +* [ ] - HS rats smoothing continues +* [ ] - documenting the milestones +* [ ] - see the possibility to write a tool from it +* [ ] - Pushing kilifish to genenetwork2/learn the source code build up +* [ ] - resmoothen celegans genotypes with the new knowledge ### Later weeks (non-programming tasks) |