diff options
| -rw-r--r-- | issues/set-up-virtuoso-on-production.gmi | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/issues/set-up-virtuoso-on-production.gmi b/issues/set-up-virtuoso-on-production.gmi index a4dd21c..e65e63c 100644 --- a/issues/set-up-virtuoso-on-production.gmi +++ b/issues/set-up-virtuoso-on-production.gmi @@ -30,7 +30,10 @@ Note where the virtuoso data directory is mapped from the "production.sh" script => https://git.genenetwork.org/gn-transform-databases/tree/generate-ttl-files.scm Run "generate-ttl-files" to generate the TTL files: ``` -time guix shell guile-dbi -m manifest.scm -- ./generate-ttl-files.scm --settings conn-dev.scm --output /export2/guix-containers/genenetwork-development/var/lib/virtuoso --documentation /tmp/doc-directory +time guix shell guile-dbi -m manifest.scm -- \ +./generate-ttl-files.scm --settings conn-dev.scm --output \ +/export2/guix-containers/genenetwork-development/var/lib/virtuoso \ +--documentation /tmp/doc-directory ``` * [Recommended] Alternatively, copy over the TTL files (in Tux02) to the correct shared directory in the container: @@ -56,7 +59,7 @@ cp /home/bonfacem/ttl-files/*ttl /export2/guix-containers/genenetwork/var/lib/vi ``` guix shell virtuoso-ose -- isql 7892 ``` -* Make sure that no pre-existing files exist in "DB.DBA.LOAD_LIST": +* Make sure that no pre-existing TTL files exist in "DB.DBA.LOAD_LIST": ``` SQL> select * from DB.DBA.LOAD_LIST; @@ -100,7 +103,7 @@ SELECT * WHERE { ## HOWTO: Generating the Xapian Index -* Make sure you are using the correct guix profile or that you have your PYTHONPATH pointing to the GN3 repository. +* Make sure you are using the correct guix profile or that you have the "PYTHONPATH" pointing to the GN3 repository. * Generate the Xapian Index using "genenetwork3/scripts/create-xapian-index" against the correct output directory (The build takes around 71 minutes on an SSD Drive): |