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| -rw-r--r-- | tasks/felixl.gmi | 18 |
1 files changed, 12 insertions, 6 deletions
diff --git a/tasks/felixl.gmi b/tasks/felixl.gmi index 2634642..347f387 100644 --- a/tasks/felixl.gmi +++ b/tasks/felixl.gmi @@ -104,17 +104,23 @@ ### this week (26-05-onwards) * [X] - process the genotype file for hs rats - * [ ] - approach by tissues categories + * [X] - approach by tissues categories * [X] - adipose and liver - test by Xsomes for memory capture - run the working commands - * [ ] - the rest 10 other tissues (in progress) - * [ ] - *.bed file vs the updated vcf files from the website? + * [X] - the rest 10 other tissues (in progress) + * [X] - *.bed file vs the updated vcf files from the website? + ### this week (02-06-onwards) -* [ ] - process the genotypes for the rest of the 10 tissues for HS rats -* [ ] - document the new findings about smoothing using bcftools and plink +* [X] - process the genotypes for the rest of the 10 tissues for HS rats +* [X] - document the new findings about smoothing using bcftools and plink + +* ## this week (09-06-onwards) +* [ ] - identify start and end points for haplotypes in hs genotype files +* [ ] - upload the final updates to gn2, test and see the results +* [ ] - gn-uploader/uploader folder, explore -### Later weeks +### Later weeks (non-programming tasks) * [ ] Kilifish into GN * [ ] Review paper on genotyping |