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| -rw-r--r-- | issues/DOL-mapping.gmi | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/issues/DOL-mapping.gmi b/issues/DOL-mapping.gmi new file mode 100644 index 0000000..949efbd --- /dev/null +++ b/issues/DOL-mapping.gmi @@ -0,0 +1,19 @@ +# DOL group mapping issues + +## Tags + +* assigned: zsloan +* type: bug +* priority: medium +* status: in-progress +* keywords: mapping + +## Description + +After generating the genotype files for the Diversity Outbred Lung (DOL) group for Jacco Boon*, there were issues with GEMMA and R/qtl mapping. + +These issues seem to have been caused by a couple mitochondrial markers having a position of 0Mb. For now, I've addressed this by changing their positions to 0.000001 and 0.000002Mb respectively. + +There's also an issue that hasn't been addressed yet with displaying mitochondrial markers in the GN2 figure. GEMMA is outputting the results, so I suspect this is because mitochondria isn't included in the databased list of chromosomes associated with Mouse. + +* as described here - https://kbroman.org/qtl2/pages/prep_do_data.html |