diff options
| -rw-r--r-- | issues/gn-volt-genofiles-parsing-integration.gmi | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/issues/gn-volt-genofiles-parsing-integration.gmi b/issues/gn-volt-genofiles-parsing-integration.gmi new file mode 100644 index 0000000..8a1be6c --- /dev/null +++ b/issues/gn-volt-genofiles-parsing-integration.gmi @@ -0,0 +1,31 @@ +# rewrite sampledata fetching with genofiles using scheme + +## Tags + +* assigned: alexm, +* type: improvement +* priority: high +* status: in progress + +## Notes + +having identified ways to link genofiles to Dataset +and fetching sample data and case attributes using them +we need to integrate the components intoa fully working module +This is in turn be used to dump data to lmdb +We chose scheme to accomplish the task +See code: + +=> https://github.com/BonfaceKilz/gn-data-vault.git + +### TODOS + +* [x] reading the genofile + +* [] parsing the genofile to obtain the sample names + +* [] query statements fetch sampledata and caseattributes + +* [] add tests + +* [] lmdb dump |