diff options
| -rw-r--r-- | tasks/dana.gmi | 5 | ||||
| -rw-r--r-- | tasks/pjotrp.gmi | 7 | ||||
| -rw-r--r-- | topics/systems/virtuoso.gmi | 2 |
3 files changed, 10 insertions, 4 deletions
diff --git a/tasks/dana.gmi b/tasks/dana.gmi index e38d721..e9ce150 100644 --- a/tasks/dana.gmi +++ b/tasks/dana.gmi @@ -13,8 +13,9 @@ * [+] connect 10Gbs to p2 * [+] connect 10Gbs to tux01(?) * [+] mount new hard disks on tux02 and tux01 (with @haoc) -* [ ] move lily inside VPN -* [ ] move quadxeon inside VPN +* [.] move lily inside VPN +* [.] move quadxeon inside VPN +* [ ] machine room access for Pjotr * [ ] space server out-of-band * [ ] rabbit https and GN2 https * [ ] get data from summer211.uthsc.edu (access machine room) diff --git a/tasks/pjotrp.gmi b/tasks/pjotrp.gmi index 2cc7024..bab9ecb 100644 --- a/tasks/pjotrp.gmi +++ b/tasks/pjotrp.gmi @@ -19,11 +19,14 @@ The tasks here should probably be broken out into appropriately tagged issues, w Now * [+] Shelby's application -* [ ] Opar.io move to dnsimple +* [+] Opar.io move to dnsimple * [.] Check Tony's list and improve search for SNPs and Hs * [.] GeneNetwork paper + +=> https://github.com/genenetwork/gn-docs/blob/master/features/introduction.md + * [ ] GeneNetwork consortium -* [ ] Machine room HDDs +* [+] Machine room HDDs * [ ] Byron epigenetics paper Later diff --git a/topics/systems/virtuoso.gmi b/topics/systems/virtuoso.gmi index e9d841d..3f608b5 100644 --- a/topics/systems/virtuoso.gmi +++ b/topics/systems/virtuoso.gmi @@ -134,6 +134,8 @@ We recap the same here. When uploading data, the virtuoso server often does not report errors properly. It simply freezes up. So, it is very helpful to validate your RDF before uploading. For this, use rapper from the raptor2 package. To validate data.ttl, a turtle file, run ``` rapper --input turtle --count data.ttl +rapper: Parsing URI file:///home/wrk/dump.ttl with parser turtle +rapper: Parsing returned 652395 triples ``` Then, upload it to a virtuoso SPARQL endpoint running at port 8892 ``` |