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| -rw-r--r-- | tasks/felixl.gmi | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/tasks/felixl.gmi b/tasks/felixl.gmi index 11ff3d7..2634642 100644 --- a/tasks/felixl.gmi +++ b/tasks/felixl.gmi @@ -95,6 +95,25 @@ * [ X ] follow up on the MSc bioinformatics project * [ X ] follow up on Alex's application with Pwani +### (12-05-onwards) + * [X] - HS genotypes scripting + +### (19-05-onwards) + * [X] - HS genotypes debugging (memory issue) + * [X] - pair programming with Bonz to improve the script + +### this week (26-05-onwards) + * [X] - process the genotype file for hs rats + * [ ] - approach by tissues categories + * [X] - adipose and liver + - test by Xsomes for memory capture + - run the working commands + * [ ] - the rest 10 other tissues (in progress) + * [ ] - *.bed file vs the updated vcf files from the website? +### this week (02-06-onwards) +* [ ] - process the genotypes for the rest of the 10 tissues for HS rats +* [ ] - document the new findings about smoothing using bcftools and plink + ### Later weeks * [ ] Kilifish into GN |